PER1

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
PER1	RIGUI	period circadian clock 1		pdf			NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Related to circadian rythm.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	38	49	34	37	51	114	45	69	26
Read_Max		R. aegyptiacus	Transcriptome	18	14	28	21	25	26	13	32	28
Read_Max		R. aegyptiacus	Genome	27	27	37	18	30	16	12	40	39
DESeq		H. sapiens	Genome	756.0	872.99	621.52	689.97	610.71	2634.16	625.57	924.25	507.7
DESeq		R. aegyptiacus	Transcriptome	211.04	186.17	482.29	291.27	298.86	453.96	153.4	352.14	321.14
DESeq		R. aegyptiacus	Genome	293.05	391.54	698.48	301.18	390.65	608.32	201.29	444.05	434.95

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	756.0	689.97	625.57	-0.13	-0.27	-0.14
7h	872.99	610.71	924.25	-0.52	0.08	0.6
23h	621.52	2634.16	507.7	2.08	-0.29	-2.38

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	756.0	872.99	621.52	0.21	-0.28	-0.49
Ebov	689.97	610.71	2634.16	-0.18	1.93	2.11
Marv	625.57	924.25	507.7	0.56	-0.3	-0.86

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	211.04	291.27	153.4	0.46	-0.46	-0.93
7h	186.17	298.86	352.14	0.68	0.92	0.24
23h	482.29	453.96	321.14	-0.09	-0.59	-0.5

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	211.04	186.17	482.29	-0.18	1.19	1.37
Ebov	291.27	298.86	453.96	0.04	0.64	0.6
Marv	153.4	352.14	321.14	1.2	1.07	-0.13