PER1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PER1 RIGUI period circadian clock 1 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Related to circadian rythm.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome38 49 34 37 51 114 45 69 26
Read_Max
batR. aegyptiacusTranscriptome 18 14 28 21 25 26 13 32 28
Read_Max
bat_genomeR. aegyptiacusGenome 27 27 37 18 30 16 12 40 39
DESeq
humanH. sapiensGenome 756.0 872.99 621.52 689.97 610.71 2634.16 625.57 924.25 507.7
DESeq
batR. aegyptiacusTranscriptome 211.04 186.17 482.29 291.27 298.86 453.96 153.4 352.14 321.14
DESeq
bat_genomeR. aegyptiacusGenome 293.05 391.54 698.48 301.18 390.65 608.32 201.29 444.05 434.95

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 756.0 689.97 625.57 -0.13 -0.27 -0.14
7h 872.99 610.71 924.25 -0.52 0.08 0.6
23h 621.52 2634.16 507.7 2.08 -0.29 -2.38

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 756.0 872.99 621.52 0.21 -0.28 -0.49
Ebov 689.97 610.71 2634.16 -0.18 1.93 2.11
Marv 625.57 924.25 507.7 0.56 -0.3 -0.86

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 211.04 291.27 153.4 0.46 -0.46 -0.93
7h 186.17 298.86 352.14 0.68 0.92 0.24
23h 482.29 453.96 321.14 -0.09 -0.59 -0.5

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 211.04 186.17 482.29 -0.18 1.19 1.37
Ebov 291.27 298.86 453.96 0.04 0.64 0.6
Marv 153.4 352.14 321.14 1.2 1.07 -0.13