TRIM38
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| TRIM38 | NM_006355, NP_006346, O00635, RNF15, RORET, TRI38_HUMAN, uc003nfm.3,RORET | tripartite motif containing 38 |  |
NONE |  |
 |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene encodes a member of the tripartite motif (TRIM) family. The encoded protein contains a RING-type zinc finger, B box-type zinc finger and SPRY domain. The function of this protein has not been identified. A pseudogene of this gene is located on the long arm of chromosome 4. The locus of the gene was covered only with very few reads.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 9 | 11 | 14 | 14 | 15 | 8 | 12 | 15 | 17 |
Read_Max |  | R. aegyptiacus | Transcriptome | 8 | 6 | 7 | 15 | 6 | 9 | 5 | 6 | 15 |
Read_Max |  | R. aegyptiacus | Genome | 2 | 3 | 4 | 2 | 2 | 2 | 3 | 4 | 4 |
DESeq | | H. sapiens | Genome | 104.51 | 121.35 | 216.44 | 126.48 | 159.53 | 52.32 | 88.72 | 116.11 | 234.78 |
DESeq | | R. aegyptiacus | Transcriptome | 24.52 | 15.52 | 25.43 | 47.7 | 13.05 | 25.38 | 13.24 | 15.05 | 29.87 |
DESeq | | R. aegyptiacus | Genome | 2.58 | 20.08 | 22.32 | 1.97 | 5.58 | 9.14 | 11.25 | 8.72 | 17.98 |