TRIM38

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TRIM38 NM_006355, NP_006346, O00635, RNF15, RORET, TRI38_HUMAN, uc003nfm.3,RORET tripartite motif containing 38 pdf NONE

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Description

This gene encodes a member of the tripartite motif (TRIM) family. The encoded protein contains a RING-type zinc finger, B box-type zinc finger and SPRY domain. The function of this protein has not been identified. A pseudogene of this gene is located on the long arm of chromosome 4. The locus of the gene was covered only with very few reads.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome9 11 14 14 15 8 12 15 17
Read_Max
batR. aegyptiacusTranscriptome 8 6 7 15 6 9 5 6 15
Read_Max
bat_genomeR. aegyptiacusGenome 2 3 4 2 2 2 3 4 4
DESeq
humanH. sapiensGenome 104.51 121.35 216.44 126.48 159.53 52.32 88.72 116.11 234.78
DESeq
batR. aegyptiacusTranscriptome 24.52 15.52 25.43 47.7 13.05 25.38 13.24 15.05 29.87
DESeq
bat_genomeR. aegyptiacusGenome 2.58 20.08 22.32 1.97 5.58 9.14 11.25 8.72 17.98

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 104.51 126.48 88.72 0.28 -0.24 -0.51
7h 121.35 159.53 116.11 0.39 -0.06 -0.46
23h 216.44 52.32 234.78 -2.05 0.12 2.17

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 104.51 121.35 216.44 0.22 1.05 0.83
Ebov 126.48 159.53 52.32 0.33 -1.27 -1.61
Marv 88.72 116.11 234.78 0.39 1.4 1.02

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 24.52 47.7 13.24 0.96 -0.89 -1.85
7h 15.52 13.05 15.05 -0.25 -0.04 0.21
23h 25.43 25.38 29.87 -0.0 0.23 0.24

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 24.52 15.52 25.43 -0.66 0.05 0.71
Ebov 47.7 13.05 25.38 -1.87 -0.91 0.96
Marv 13.24 15.05 29.87 0.18 1.17 0.99