TRIM67

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TRIM67 NM_001004342, NP_001004342, Q5TER7, Q5TER8, Q6ZTA4, Q7Z4K7, TNL, TRI67_HUMAN,TNL tripartite motif containing 67 NM_001004342 pdf

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Description

The tripartite motif containing 67 (TRIM67) gene showed significantly expression only betwenn 3 h and 7 h p.i. for EBOV-infected cells. There was a twofold upregulation and the maxiumum of reads within this probes was 41 reads.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome20 12 11 17 15 34 26 16 12
Read_Max
batR. aegyptiacusTranscriptome 1 3 4 2 1 4 NA 1 2
Read_Max
bat_genomeR. aegyptiacusGenome 5 3 4 3 3 2 2 3 4
DESeq
humanH. sapiensGenome 360.23 291.66 267.08 361.46 306.67 816.87 315.04 236.81 210.86
DESeq
batR. aegyptiacusTranscriptome 1.84 6.45 9.55 3.75 2.1 9.98 1.0 1.83 2.75
DESeq
bat_genomeR. aegyptiacusGenome 19.77 23.73 22.32 15.8 11.16 26.11 11.25 3.17 11.13

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 360.23 361.46 315.04 0.0 -0.19 -0.2
7h 291.66 306.67 236.81 0.07 -0.3 -0.37
23h 267.08 816.87 210.86 1.61 -0.34 -1.95

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 360.23 291.66 267.08 -0.3 -0.43 -0.13
Ebov 361.46 306.67 816.87 -0.24 1.18 1.41
Marv 315.04 236.81 210.86 -0.41 -0.58 -0.17

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1.84 3.75 1.0 1.03 -0.88 -1.91
7h 6.45 2.1 1.83 -1.62 -1.82 -0.2
23h 9.55 9.98 2.75 0.06 -1.8 -1.86

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1.84 6.45 9.55 1.81 2.38 0.57
Ebov 3.75 2.1 9.98 -0.84 1.41 2.25
Marv 1.0 1.83 2.75 0.87 1.46 0.59