TRIM67

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
TRIM67	NM_001004342, NP_001004342, Q5TER7, Q5TER8, Q6ZTA4, Q7Z4K7, TNL, TRI67_HUMAN,TNL	tripartite motif containing 67	NM_001004342	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The tripartite motif containing 67 (TRIM67) gene showed significantly expression only betwenn 3 h and 7 h p.i. for EBOV-infected cells. There was a twofold upregulation and the maxiumum of reads within this probes was 41 reads.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	20	12	11	17	15	34	26	16	12
Read_Max		R. aegyptiacus	Transcriptome	1	3	4	2	1	4	NA	1	2
Read_Max		R. aegyptiacus	Genome	5	3	4	3	3	2	2	3	4
DESeq		H. sapiens	Genome	360.23	291.66	267.08	361.46	306.67	816.87	315.04	236.81	210.86
DESeq		R. aegyptiacus	Transcriptome	1.84	6.45	9.55	3.75	2.1	9.98	1.0	1.83	2.75
DESeq		R. aegyptiacus	Genome	19.77	23.73	22.32	15.8	11.16	26.11	11.25	3.17	11.13

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	360.23	361.46	315.04	0.0	-0.19	-0.2
7h	291.66	306.67	236.81	0.07	-0.3	-0.37
23h	267.08	816.87	210.86	1.61	-0.34	-1.95

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	360.23	291.66	267.08	-0.3	-0.43	-0.13
Ebov	361.46	306.67	816.87	-0.24	1.18	1.41
Marv	315.04	236.81	210.86	-0.41	-0.58	-0.17

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	1.84	3.75	1.0	1.03	-0.88	-1.91
7h	6.45	2.1	1.83	-1.62	-1.82	-0.2
23h	9.55	9.98	2.75	0.06	-1.8	-1.86

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	1.84	6.45	9.55	1.81	2.38	0.57
Ebov	3.75	2.1	9.98	-0.84	1.41	2.25
Marv	1.0	1.83	2.75	0.87	1.46	0.59