CALM1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
CALM1 Calmodulin 1, CPVT4, ,CAMI, PHKD, DD132 calmodulin 1 (phosphorylase kinase, delta) pdf

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Description

Homo sapiens calmodulin 1 (phosphorylase kinase, delta) (CALM1), mRNA. This gene encodes a member of the EF-hand calcium-binding protein family. It is one of three genes which encode an identical calcium binding protein which is one of the four subunits of phosphorylase kinase. Two pseudogenes have been identified on chromosome 7 and X. Multiple transcript variants encoding different isoforms have been found for this gene.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome620 483 650 505 820 278 655 663 676
Read_Max
batR. aegyptiacusTranscriptome 2355 2026 965 1565 1448 1797 1569 1812 2444
Read_Max
bat_genomeR. aegyptiacusGenome 2611 1708 826 2043 1263 1069 1385 2261 2697
DESeq
humanH. sapiensGenome 6717.87 6063.12 6622.15 6215.44 6303.81 2030.15 6163.36 5685.18 7827.72
DESeq
batR. aegyptiacusTranscriptome 6647.35 6461.03 4096.81 5632.36 5679.04 5904.92 6674.32 5598.56 6860.47
DESeq
bat_genomeR. aegyptiacusGenome 18335.09 15842.38 12844.83 17956.4 16956.31 17129.59 20377.65 15769.32 18990.33

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6717.87 6215.44 6163.36 -0.11 -0.12 -0.01
7h 6063.12 6303.81 5685.18 0.06 -0.09 -0.15
23h 6622.15 2030.15 7827.72 -1.71 0.24 1.95

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6717.87 6063.12 6622.15 -0.15 -0.02 0.13
Ebov 6215.44 6303.81 2030.15 0.02 -1.61 -1.63
Marv 6163.36 5685.18 7827.72 -0.12 0.34 0.46

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6647.35 5632.36 6674.32 -0.24 0.01 0.24
7h 6461.03 5679.04 5598.56 -0.19 -0.21 -0.02
23h 4096.81 5904.92 6860.47 0.53 0.74 0.22

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6647.35 6461.03 4096.81 -0.04 -0.7 -0.66
Ebov 5632.36 5679.04 5904.92 0.01 0.07 0.06
Marv 6674.32 5598.56 6860.47 -0.25 0.04 0.29