GJA1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
GJA1 AVSD3, CMDR, CX43, GJAL, HLHS1, HSS, ODDD,CX43, ODD, ODOD, SDTY3 gap junction protein, alpha 1, 43kDa NM_000165 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

GJA1 (gap junction protein, alpha 1) is envolved in the gap junction pathway.

It seems to be downregulated in human cells infected with Ebola after 23 h and in bat cells.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome591 459 425 467 557 328 648 756 855
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 1290 836 391 921 581 342 640 1217 751
DESeq
humanH. sapiensGenome 7017.24 5385.93 5300.7 6003.27 5681.9 3375.02 6308.98 6664.39 12998.06
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 10590.26 9662.6 5864.53 10117.76 9854.35 6563.6 11564.69 10841.95 6687.71

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 7017.24 6003.27 6308.98 -0.23 -0.15 0.07
7h 5385.93 5681.9 6664.39 0.08 0.31 0.23
23h 5300.7 3375.02 12998.06 -0.65 1.29 1.95

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 7017.24 5385.93 5300.7 -0.38 -0.4 -0.02
Ebov 6003.27 5681.9 3375.02 -0.08 -0.83 -0.75
Marv 6308.98 6664.39 12998.06 0.08 1.04 0.96

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA