GJA1

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
GJA1	AVSD3, CMDR, CX43, GJAL, HLHS1, HSS, ODDD,CX43, ODD, ODOD, SDTY3	gap junction protein, alpha 1, 43kDa	NM_000165	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

GJA1 (gap junction protein, alpha 1) is envolved in the gap junction pathway.

It seems to be downregulated in human cells infected with Ebola after 23 h and in bat cells.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	591	459	425	467	557	328	648	756	855
Read_Max		R. aegyptiacus	Transcriptome	NA	NA	NA	NA	NA	NA	NA	NA	NA
Read_Max		R. aegyptiacus	Genome	1290	836	391	921	581	342	640	1217	751
DESeq		H. sapiens	Genome	7017.24	5385.93	5300.7	6003.27	5681.9	3375.02	6308.98	6664.39	12998.06
DESeq		R. aegyptiacus	Transcriptome	NA	NA	NA	NA	NA	NA	NA	NA	NA
DESeq		R. aegyptiacus	Genome	10590.26	9662.6	5864.53	10117.76	9854.35	6563.6	11564.69	10841.95	6687.71

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	7017.24	6003.27	6308.98	-0.23	-0.15	0.07
7h	5385.93	5681.9	6664.39	0.08	0.31	0.23
23h	5300.7	3375.02	12998.06	-0.65	1.29	1.95

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	7017.24	5385.93	5300.7	-0.38	-0.4	-0.02
Ebov	6003.27	5681.9	3375.02	-0.08	-0.83	-0.75
Marv	6308.98	6664.39	12998.06	0.08	1.04	0.96

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	NA	NA	NA	NA	NA	NA
7h	NA	NA	NA	NA	NA	NA
23h	NA	NA	NA	NA	NA	NA

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	NA	NA	NA	NA	NA	NA
Ebov	NA	NA	NA	NA	NA	NA
Marv	NA	NA	NA	NA	NA	NA