TLN1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TLN1 ILWEQ, TLN talin 1 NM_006289 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The talin 1 gene is involved in the Rap1 signaling pathway, Focal adhesion, Platelet activation and HTLV-I infection. It seems to be slightly upregulated during ebola infection in human.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome532 658 461 524 753 1818 773 830 622
Read_Max
batR. aegyptiacusTranscriptome 751 597 428 547 461 545 432 586 631
Read_Max
bat_genomeR. aegyptiacusGenome 952 673 428 646 404 358 416 783 785
DESeq
humanH. sapiensGenome 14548.98 18262.84 13814.17 16939.0 15796.63 48262.45 17493.34 19511.55 22193.75
DESeq
batR. aegyptiacusTranscriptome 23313.22 19801.35 16534.5 17873.01 17801.69 20721.82 19212.25 16982.06 18891.21
DESeq
bat_genomeR. aegyptiacusGenome 27657.75 20666.84 18203.91 25078.13 21137.34 24404.64 22601.97 19041.8 21497.26

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 14548.98 16939.0 17493.34 0.22 0.27 0.05
7h 18262.84 15796.63 19511.55 -0.21 0.1 0.3
23h 13814.17 48262.45 22193.75 1.8 0.68 -1.12

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 14548.98 18262.84 13814.17 0.33 -0.07 -0.4
Ebov 16939.0 15796.63 48262.45 -0.1 1.51 1.61
Marv 17493.34 19511.55 22193.75 0.16 0.34 0.19

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 23313.22 17873.01 19212.25 -0.38 -0.28 0.1
7h 19801.35 17801.69 16982.06 -0.15 -0.22 -0.07
23h 16534.5 20721.82 18891.21 0.33 0.19 -0.13

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 23313.22 19801.35 16534.5 -0.24 -0.5 -0.26
Ebov 17873.01 17801.69 20721.82 -0.01 0.21 0.22
Marv 19212.25 16982.06 18891.21 -0.18 -0.02 0.15