LRRC8A

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
LRRC8A KIAA1437, FLJ10337, SWELL1 leucine rich repeat containing 8 family, member A NM_019594 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Involved in B-cell development. Expression pattern different between treatments and species.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome455 292 211 250 328 765 372 417 304
Read_Max
batR. aegyptiacusTranscriptome 130 119 129 125 114 245 108 175 183
Read_Max
bat_genomeR. aegyptiacusGenome 173 149 134 139 105 171 110 270 231
DESeq
humanH. sapiensGenome 7259.77 3914.25 3121.45 4625.33 3785.29 10475.74 5059.84 4381.44 5222.44
DESeq
batR. aegyptiacusTranscriptome 1465.36 1458.75 1740.47 1609.83 1694.01 2820.15 1348.12 1499.74 2011.96
DESeq
bat_genomeR. aegyptiacusGenome 2315.2 2517.18 2707.99 2385.76 2788.1 4839.15 2372.76 2398.66 3319.46

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 7259.77 4625.33 5059.84 -0.65 -0.52 0.13
7h 3914.25 3785.29 4381.44 -0.05 0.16 0.21
23h 3121.45 10475.74 5222.44 1.75 0.74 -1.0

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 7259.77 3914.25 3121.45 -0.89 -1.22 -0.33
Ebov 4625.33 3785.29 10475.74 -0.29 1.18 1.47
Marv 5059.84 4381.44 5222.44 -0.21 0.05 0.25

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1465.36 1609.83 1348.12 0.14 -0.12 -0.26
7h 1458.75 1694.01 1499.74 0.22 0.04 -0.18
23h 1740.47 2820.15 2011.96 0.7 0.21 -0.49

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1465.36 1458.75 1740.47 -0.01 0.25 0.25
Ebov 1609.83 1694.01 2820.15 0.07 0.81 0.74
Marv 1348.12 1499.74 2011.96 0.15 0.58 0.42