LRP11

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
LRP11 bA350J20.3, MANSC3 low density lipoprotein receptor-related protein 11 NM_032832 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

http://datasheets.scbt.com/sc-247825.pdf ???

This gene was expressed in all probes. Weaker expression was observed in the 7h and 23h probes for the infected and uninfected probes in human. There are some reads (<30) in the intronic region between exon 1 to 2 and exon 6 to 7.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome138 121 116 121 148 78 170 148 72
Read_Max
batR. aegyptiacusTranscriptome 143 140 200 128 104 180 151 133 211
Read_Max
bat_genomeR. aegyptiacusGenome 148 114 167 125 83 95 118 155 231
DESeq
humanH. sapiensGenome 3430.98 2239.62 2149.47 3093.39 2387.82 966.89 3263.32 2200.81 1807.08
DESeq
batR. aegyptiacusTranscriptome 842.82 808.84 1415.54 793.05 831.08 1096.84 1130.09 742.94 1228.22
DESeq
bat_genomeR. aegyptiacusGenome 1408.54 1275.93 1951.5 1190.91 1300.3 1755.78 1749.77 1270.3 1845.95

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3430.98 3093.39 3263.32 -0.15 -0.07 0.08
7h 2239.62 2387.82 2200.81 0.09 -0.03 -0.12
23h 2149.47 966.89 1807.08 -1.15 -0.25 0.9

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3430.98 2239.62 2149.47 -0.62 -0.67 -0.06
Ebov 3093.39 2387.82 966.89 -0.37 -1.68 -1.3
Marv 3263.32 2200.81 1807.08 -0.57 -0.85 -0.28

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 842.82 793.05 1130.09 -0.09 0.42 0.51
7h 808.84 831.08 742.94 0.04 -0.12 -0.16
23h 1415.54 1096.84 1228.22 -0.37 -0.2 0.16

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 842.82 808.84 1415.54 -0.06 0.75 0.81
Ebov 793.05 831.08 1096.84 0.07 0.47 0.4
Marv 1130.09 742.94 1228.22 -0.61 0.12 0.73