HMGA2

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
HMGA2	BABL, LIPO	high mobility group AT-hook 2	NM_003483	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Belongs to the non-histone chromosomal high mobility group (HMG) protein family. Interesting annotation.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	2027	2041	1294	1795	2231	632	2184	2416	815
Read_Max		R. aegyptiacus	Transcriptome	NA	NA	NA	NA	NA	NA	NA	NA	NA
Read_Max		R. aegyptiacus	Genome	464	233	152	353	175	388	308	372	404
DESeq		H. sapiens	Genome	19997.37	18394.41	16731.09	18393.37	18644.4	5802.9	17510.89	16195.04	11654.1
DESeq		R. aegyptiacus	Transcriptome	NA	NA	NA	NA	NA	NA	NA	NA	NA
DESeq		R. aegyptiacus	Genome	3571.63	2686.94	2395.57	3388.06	2925.39	6049.27	4249.61	2608.0	3768.96

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	19997.37	18393.37	17510.89	-0.12	-0.19	-0.07
7h	18394.41	18644.4	16195.04	0.02	-0.18	-0.2
23h	16731.09	5802.9	11654.1	-1.53	-0.52	1.01

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	19997.37	18394.41	16731.09	-0.12	-0.26	-0.14
Ebov	18393.37	18644.4	5802.9	0.02	-1.66	-1.68
Marv	17510.89	16195.04	11654.1	-0.11	-0.59	-0.47

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	NA	NA	NA	NA	NA	NA
7h	NA	NA	NA	NA	NA	NA
23h	NA	NA	NA	NA	NA	NA

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	NA	NA	NA	NA	NA	NA
Ebov	NA	NA	NA	NA	NA	NA
Marv	NA	NA	NA	NA	NA	NA