HMGA2

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
HMGA2 BABL, LIPO high mobility group AT-hook 2 NM_003483 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Belongs to the non-histone chromosomal high mobility group (HMG) protein family. Interesting annotation.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome2027 2041 1294 1795 2231 632 2184 2416 815
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 464 233 152 353 175 388 308 372 404
DESeq
humanH. sapiensGenome 19997.37 18394.41 16731.09 18393.37 18644.4 5802.9 17510.89 16195.04 11654.1
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 3571.63 2686.94 2395.57 3388.06 2925.39 6049.27 4249.61 2608.0 3768.96

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 19997.37 18393.37 17510.89 -0.12 -0.19 -0.07
7h 18394.41 18644.4 16195.04 0.02 -0.18 -0.2
23h 16731.09 5802.9 11654.1 -1.53 -0.52 1.01

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 19997.37 18394.41 16731.09 -0.12 -0.26 -0.14
Ebov 18393.37 18644.4 5802.9 0.02 -1.66 -1.68
Marv 17510.89 16195.04 11654.1 -0.11 -0.59 -0.47

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA