GMCL1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
GMCL1 FLJ13057, BTBD13, GCL1, SPATA29 germ cell-less, spermatogenesis associated 1 NM_178439 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Without a defined function. Possible splicing variant for marburg infected cells in humans (not much frequency).

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome119 162 166 112 184 65 147 196 144
Read_Max
batR. aegyptiacusTranscriptome 96 86 67 116 111 88 79 125 87
Read_Max
bat_genomeR. aegyptiacusGenome 101 119 60 81 88 47 74 160 97
DESeq
humanH. sapiensGenome 1411.55 1515.51 1718.59 1302.52 1556.99 557.64 1268.56 1439.83 1430.86
DESeq
batR. aegyptiacusTranscriptome 715.96 602.8 718.04 971.61 1016.15 529.67 813.06 904.05 636.91
DESeq
bat_genomeR. aegyptiacusGenome 1077.68 1412.84 938.37 963.78 1340.48 754.53 1310.08 1337.7 887.87

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1411.55 1302.52 1268.56 -0.12 -0.15 -0.04
7h 1515.51 1556.99 1439.83 0.04 -0.07 -0.11
23h 1718.59 557.64 1430.86 -1.62 -0.26 1.36

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1411.55 1515.51 1718.59 0.1 0.28 0.18
Ebov 1302.52 1556.99 557.64 0.26 -1.22 -1.48
Marv 1268.56 1439.83 1430.86 0.18 0.17 -0.01

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 715.96 971.61 813.06 0.44 0.18 -0.26
7h 602.8 1016.15 904.05 0.75 0.58 -0.17
23h 718.04 529.67 636.91 -0.44 -0.17 0.27

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 715.96 602.8 718.04 -0.25 0.0 0.25
Ebov 971.61 1016.15 529.67 0.06 -0.88 -0.94
Marv 813.06 904.05 636.91 0.15 -0.35 -0.51