NEU1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
NEU1 Sialidase sialidase 1 (lysosomal sialidase) pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Lysosomal enzyme that cleaves terminal sialic acid residues from substrates such as glycoproteins and glycolipids.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome274 411 332 352 518 1093 453 544 463
Read_Max
batR. aegyptiacusTranscriptome 276 293 317 252 222 238 184 282 384
Read_Max
bat_genomeR. aegyptiacusGenome 332 284 277 292 188 150 172 368 439
DESeq
humanH. sapiensGenome 3009.84 3424.71 2735.24 3403.66 3266.62 8186.04 3175.6 3411.83 3722.99
DESeq
batR. aegyptiacusTranscriptome 1656.08 1841.79 2423.31 1730.7 1690.72 1800.02 1509.42 1610.45 2091.55
DESeq
bat_genomeR. aegyptiacusGenome 2160.51 2381.19 2943.42 2421.31 2309.28 2626.48 1985.92 2140.16 2720.12

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3009.84 3403.66 3175.6 0.18 0.08 -0.1
7h 3424.71 3266.62 3411.83 -0.07 -0.01 0.06
23h 2735.24 8186.04 3722.99 1.58 0.44 -1.14

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3009.84 3424.71 2735.24 0.19 -0.14 -0.32
Ebov 3403.66 3266.62 8186.04 -0.06 1.27 1.33
Marv 3175.6 3411.83 3722.99 0.1 0.23 0.13

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1656.08 1730.7 1509.42 0.06 -0.13 -0.2
7h 1841.79 1690.72 1610.45 -0.12 -0.19 -0.07
23h 2423.31 1800.02 2091.55 -0.43 -0.21 0.22

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1656.08 1841.79 2423.31 0.15 0.55 0.4
Ebov 1730.7 1690.72 1800.02 -0.03 0.06 0.09
Marv 1509.42 1610.45 2091.55 0.09 0.47 0.38