AMBRA1

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
AMBRA1	FLJ20294, KIAA1736, WDR94, DCAF3	autophagy/beclin-1 regulator 1	NM_017749	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens autophagy/beclin-1 regulator 1 (AMBRA1), transcript variant 2, mRNA.

This gene contains a very interesting 550\,nt long ncRNA, being processed after splicing. This intronic transcript is upregulated in EBOV.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	709	998	677	965	1113	1370	1102	1360	672
Read_Max		R. aegyptiacus	Transcriptome	71	78	49	69	60	79	41	87	61
Read_Max		R. aegyptiacus	Genome	78	71	44	80	49	44	34	105	60
DESeq		H. sapiens	Genome	1949.39	2182.51	1931.05	2346.24	2052.89	5646.31	2319.45	2303.13	2210.49
DESeq		R. aegyptiacus	Transcriptome	989.01	1114.74	881.73	956.04	825.6	1024.98	810.83	823.9	821.48
DESeq		R. aegyptiacus	Genome	1445.49	1335.26	1322.2	1663.91	1238.91	1499.92	1242.61	1116.47	1307.4

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	1949.39	2346.24	2319.45	0.27	0.25	-0.02
7h	2182.51	2052.89	2303.13	-0.09	0.08	0.17
23h	1931.05	5646.31	2210.49	1.55	0.19	-1.35

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	1949.39	2182.51	1931.05	0.16	-0.01	-0.18
Ebov	2346.24	2052.89	5646.31	-0.19	1.27	1.46
Marv	2319.45	2303.13	2210.49	-0.01	-0.07	-0.06

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	989.01	956.04	810.83	-0.05	-0.29	-0.24
7h	1114.74	825.6	823.9	-0.43	-0.44	-0.0
23h	881.73	1024.98	821.48	0.22	-0.1	-0.32

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	989.01	1114.74	881.73	0.17	-0.17	-0.34
Ebov	956.04	825.6	1024.98	-0.21	0.1	0.31
Marv	810.83	823.9	821.48	0.02	0.02	-0.0