GABARAPL1

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
GABARAPL1	gec1, APG8L, ATG8L, ATG8B	GABA(A) receptor-associated protein like 1		pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens GABA(A) receptor-associated protein like 1 (GABARAPL1), mRNA.

This transcript is slightly upregulated in EBOV 23 h, otherwise not changing much in its transcription profile and amount.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	58	74	81	65	84	203	75	125	159
Read_Max		R. aegyptiacus	Transcriptome	158	170	204	196	153	166	114	237	218
Read_Max		R. aegyptiacus	Genome	264	288	236	267	168	136	141	333	332
DESeq		H. sapiens	Genome	526.66	597.63	726.75	622.67	641.61	1811.71	619.43	700.43	1389.54
DESeq		R. aegyptiacus	Transcriptome	389.99	410.37	721.71	552.23	486.12	437.28	353.63	538.04	550.32
DESeq		R. aegyptiacus	Genome	715.01	952.84	1133.63	763.32	804.73	793.69	628.61	846.87	860.47

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	526.66	622.67	619.43	0.24	0.23	-0.01
7h	597.63	641.61	700.43	0.1	0.23	0.13
23h	726.75	1811.71	1389.54	1.32	0.94	-0.38

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	526.66	597.63	726.75	0.18	0.46	0.28
Ebov	622.67	641.61	1811.71	0.04	1.54	1.5
Marv	619.43	700.43	1389.54	0.18	1.17	0.99

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	389.99	552.23	353.63	0.5	-0.14	-0.64
7h	410.37	486.12	538.04	0.24	0.39	0.15
23h	721.71	437.28	550.32	-0.72	-0.39	0.33

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	389.99	410.37	721.71	0.07	0.89	0.81
Ebov	552.23	486.12	437.28	-0.18	-0.34	-0.15
Marv	353.63	538.04	550.32	0.61	0.64	0.03