GABARAPL1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
GABARAPL1 gec1, APG8L, ATG8L, ATG8B GABA(A) receptor-associated protein like 1 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens GABA(A) receptor-associated protein like 1 (GABARAPL1), mRNA.

This transcript is slightly upregulated in EBOV 23 h, otherwise not changing much in its transcription profile and amount.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome58 74 81 65 84 203 75 125 159
Read_Max
batR. aegyptiacusTranscriptome 158 170 204 196 153 166 114 237 218
Read_Max
bat_genomeR. aegyptiacusGenome 264 288 236 267 168 136 141 333 332
DESeq
humanH. sapiensGenome 526.66 597.63 726.75 622.67 641.61 1811.71 619.43 700.43 1389.54
DESeq
batR. aegyptiacusTranscriptome 389.99 410.37 721.71 552.23 486.12 437.28 353.63 538.04 550.32
DESeq
bat_genomeR. aegyptiacusGenome 715.01 952.84 1133.63 763.32 804.73 793.69 628.61 846.87 860.47

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 526.66 622.67 619.43 0.24 0.23 -0.01
7h 597.63 641.61 700.43 0.1 0.23 0.13
23h 726.75 1811.71 1389.54 1.32 0.94 -0.38

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 526.66 597.63 726.75 0.18 0.46 0.28
Ebov 622.67 641.61 1811.71 0.04 1.54 1.5
Marv 619.43 700.43 1389.54 0.18 1.17 0.99

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 389.99 552.23 353.63 0.5 -0.14 -0.64
7h 410.37 486.12 538.04 0.24 0.39 0.15
23h 721.71 437.28 550.32 -0.72 -0.39 0.33

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 389.99 410.37 721.71 0.07 0.89 0.81
Ebov 552.23 486.12 437.28 -0.18 -0.34 -0.15
Marv 353.63 538.04 550.32 0.61 0.64 0.03