LPP

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
LPP LIM domain containing preferred translocation partner in lipoma NM_005578 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The encoded protein localizes to the cell periphery in focal adhesions and may be involved in cell-cell adhesion and cell motility. Gene too big for IGV view format, results need to be recheck with another tool.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome290 136 252 118 369 630 136 165 473
Read_Max
batR. aegyptiacusTranscriptome 173 141 98 149 142 125 102 147 120
Read_Max
bat_genomeR. aegyptiacusGenome 223 192 124 149 137 123 127 226 220
DESeq
humanH. sapiensGenome 6966.5 5819.37 5531.03 5070.2 7005.38 14640.63 4602.82 4841.87 10170.96
DESeq
batR. aegyptiacusTranscriptome 1649.36 1128.35 1211.54 1359.85 1240.64 1253.39 1131.2 1064.33 832.85
DESeq
bat_genomeR. aegyptiacusGenome 12294.43 10440.2 9732.93 8217.84 9900.11 13262.97 11236.32 8689.1 9686.1

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6966.5 5070.2 4602.82 -0.46 -0.6 -0.14
7h 5819.37 7005.38 4841.87 0.27 -0.27 -0.53
23h 5531.03 14640.63 10170.96 1.4 0.88 -0.53

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6966.5 5819.37 5531.03 -0.26 -0.33 -0.07
Ebov 5070.2 7005.38 14640.63 0.47 1.53 1.06
Marv 4602.82 4841.87 10170.96 0.07 1.14 1.07

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1649.36 1359.85 1131.2 -0.28 -0.54 -0.27
7h 1128.35 1240.64 1064.33 0.14 -0.08 -0.22
23h 1211.54 1253.39 832.85 0.05 -0.54 -0.59

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1649.36 1128.35 1211.54 -0.55 -0.45 0.1
Ebov 1359.85 1240.64 1253.39 -0.13 -0.12 0.01
Marv 1131.2 1064.33 832.85 -0.09 -0.44 -0.35