LAMB1

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
LAMB1		laminin, beta 1	NM_002291	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. The annotation seems incomplete. Extra sashimi plots to see probable differential splicing and extra exons.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source	Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max	H. sapiens	Genome	861	1184	823	936	1491	2731	1201	1768	900
Read_Max	R. aegyptiacus	Transcriptome	428	398	363	460	340	564	396	482	515
Read_Max	R. aegyptiacus	Genome	778	635	417	532	407	455	446	772	716
DESeq	H. sapiens	Genome	20705.7	25233.68	20339.01	22372.08	25985.34	58595.07	23430.26	29413.1	24627.23
DESeq	R. aegyptiacus	Transcriptome	8899.77	8184.73	8727.66	7542.44	7953.54	11326.36	9063.77	7482.32	9076.98
DESeq	R. aegyptiacus	Genome	16543.26	14100.07	15522.7	16193.74	15116.92	21159.39	16508.13	13794.88	16783.07

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	20705.7	22372.08	23430.26	0.11	0.18	0.07
7h	25233.68	25985.34	29413.1	0.04	0.22	0.18
23h	20339.01	58595.07	24627.23	1.53	0.28	-1.25

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	20705.7	25233.68	20339.01	0.29	-0.03	-0.31
Ebov	22372.08	25985.34	58595.07	0.22	1.39	1.17
Marv	23430.26	29413.1	24627.23	0.33	0.07	-0.26

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	8899.77	7542.44	9063.77	-0.24	0.03	0.27
7h	8184.73	7953.54	7482.32	-0.04	-0.13	-0.09
23h	8727.66	11326.36	9076.98	0.38	0.06	-0.32

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	8899.77	8184.73	8727.66	-0.12	-0.03	0.09
Ebov	7542.44	7953.54	11326.36	0.08	0.59	0.51
Marv	9063.77	7482.32	9076.98	-0.28	0.0	0.28

Differential transcriptional responses to Ebola and Marburg virus infection in cells from bats and humans

Supplemental Material