LAMB1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
LAMB1 laminin, beta 1 NM_002291 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. The annotation seems incomplete. Extra sashimi plots to see probable differential splicing and extra exons.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome861 1184 823 936 1491 2731 1201 1768 900
Read_Max
batR. aegyptiacusTranscriptome 428 398 363 460 340 564 396 482 515
Read_Max
bat_genomeR. aegyptiacusGenome 778 635 417 532 407 455 446 772 716
DESeq
humanH. sapiensGenome 20705.7 25233.68 20339.01 22372.08 25985.34 58595.07 23430.26 29413.1 24627.23
DESeq
batR. aegyptiacusTranscriptome 8899.77 8184.73 8727.66 7542.44 7953.54 11326.36 9063.77 7482.32 9076.98
DESeq
bat_genomeR. aegyptiacusGenome 16543.26 14100.07 15522.7 16193.74 15116.92 21159.39 16508.13 13794.88 16783.07

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 20705.7 22372.08 23430.26 0.11 0.18 0.07
7h 25233.68 25985.34 29413.1 0.04 0.22 0.18
23h 20339.01 58595.07 24627.23 1.53 0.28 -1.25

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 20705.7 25233.68 20339.01 0.29 -0.03 -0.31
Ebov 22372.08 25985.34 58595.07 0.22 1.39 1.17
Marv 23430.26 29413.1 24627.23 0.33 0.07 -0.26

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 8899.77 7542.44 9063.77 -0.24 0.03 0.27
7h 8184.73 7953.54 7482.32 -0.04 -0.13 -0.09
23h 8727.66 11326.36 9076.98 0.38 0.06 -0.32

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 8899.77 8184.73 8727.66 -0.12 -0.03 0.09
Ebov 7542.44 7953.54 11326.36 0.08 0.59 0.51
Marv 9063.77 7482.32 9076.98 -0.28 0.0 0.28