NUCKS1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
NUCKS1 NUCKS nuclear casein kinase and cyclin-dependent kinase substrate 1 NM_022731 pdf

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Description

The nuclear casein kinase and cyclin-dependent kinase substrate 1 gene is involved in poly(A) RNA binding. It seems to be downregulated after 23 hours of Ebola and Marburg virus infection in humans, and also after 23 hours of Ebola infection in bats.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome3776 3284 3353 3400 5060 1898 4172 4351 2446
Read_Max
batR. aegyptiacusTranscriptome 2605 2230 1555 2662 2684 1569 2615 2912 1919
Read_Max
bat_genomeR. aegyptiacusGenome 3170 3040 1476 2384 2075 1025 2415 3865 2342
DESeq
humanH. sapiensGenome 67113.93 48815.18 55229.85 57557.59 57235.98 20896.53 55969.3 43177.91 47167.93
DESeq
batR. aegyptiacusTranscriptome 8771.23 7811.67 6758.54 8722.74 9356.35 5880.54 11226.29 8798.47 6075.85
DESeq
bat_genomeR. aegyptiacusGenome 15460.43 16808.01 10852.05 14473.55 17009.88 10667.81 20591.31 16554.33 10358.21

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 67113.93 57557.59 55969.3 -0.22 -0.26 -0.04
7h 48815.18 57235.98 43177.91 0.23 -0.18 -0.41
23h 55229.85 20896.53 47167.93 -1.4 -0.23 1.17

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 67113.93 48815.18 55229.85 -0.46 -0.28 0.18
Ebov 57557.59 57235.98 20896.53 -0.01 -1.46 -1.45
Marv 55969.3 43177.91 47167.93 -0.37 -0.25 0.13

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 8771.23 8722.74 11226.29 -0.01 0.36 0.36
7h 7811.67 9356.35 8798.47 0.26 0.17 -0.09
23h 6758.54 5880.54 6075.85 -0.2 -0.15 0.05

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 8771.23 7811.67 6758.54 -0.17 -0.38 -0.21
Ebov 8722.74 9356.35 5880.54 0.1 -0.57 -0.67
Marv 11226.29 8798.47 6075.85 -0.35 -0.89 -0.53