EDEM1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
EDEM1 KIAA0212, EDEM ER degradation enhancer, mannosidase alpha-like 1 NM_014674 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Extracts misfolded glycoproteins, but not glycoproteins undergoing productive folding, from the calnexin cycle.

This gene seems not to be involved in Ebola nor Marburg virus infection.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome253 355 276 214 323 333 280 335 356
Read_Max
batR. aegyptiacusTranscriptome 196 183 124 187 168 171 133 221 200
Read_Max
bat_genomeR. aegyptiacusGenome 200 184 101 173 135 99 114 255 221
DESeq
humanH. sapiensGenome 6182.07 6943.27 8016.07 5755.75 6646.06 7738.62 5431.78 6004.12 11016.91
DESeq
batR. aegyptiacusTranscriptome 1203.24 1204.6 1134.59 1256.38 1318.39 1253.39 1204.62 1241.97 1222.97
DESeq
bat_genomeR. aegyptiacusGenome 2206.91 2254.33 1998.36 2307.75 2428.71 2458.09 2286.17 2359.01 2277.47

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6182.07 5755.75 5431.78 -0.1 -0.19 -0.08
7h 6943.27 6646.06 6004.12 -0.06 -0.21 -0.15
23h 8016.07 7738.62 11016.91 -0.05 0.46 0.51

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6182.07 6943.27 8016.07 0.17 0.37 0.21
Ebov 5755.75 6646.06 7738.62 0.21 0.43 0.22
Marv 5431.78 6004.12 11016.91 0.14 1.02 0.88

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1203.24 1256.38 1204.62 0.06 0.0 -0.06
7h 1204.6 1318.39 1241.97 0.13 0.04 -0.09
23h 1134.59 1253.39 1222.97 0.14 0.11 -0.04

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1203.24 1204.6 1134.59 0.0 -0.08 -0.09
Ebov 1256.38 1318.39 1253.39 0.07 -0.0 -0.07
Marv 1204.62 1241.97 1222.97 0.04 0.02 -0.02