EDEM1

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
EDEM1	KIAA0212, EDEM	ER degradation enhancer, mannosidase alpha-like 1	NM_014674	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Extracts misfolded glycoproteins, but not glycoproteins undergoing productive folding, from the calnexin cycle.

This gene seems not to be involved in Ebola nor Marburg virus infection.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	253	355	276	214	323	333	280	335	356
Read_Max		R. aegyptiacus	Transcriptome	196	183	124	187	168	171	133	221	200
Read_Max		R. aegyptiacus	Genome	200	184	101	173	135	99	114	255	221
DESeq		H. sapiens	Genome	6182.07	6943.27	8016.07	5755.75	6646.06	7738.62	5431.78	6004.12	11016.91
DESeq		R. aegyptiacus	Transcriptome	1203.24	1204.6	1134.59	1256.38	1318.39	1253.39	1204.62	1241.97	1222.97
DESeq		R. aegyptiacus	Genome	2206.91	2254.33	1998.36	2307.75	2428.71	2458.09	2286.17	2359.01	2277.47

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	6182.07	5755.75	5431.78	-0.1	-0.19	-0.08
7h	6943.27	6646.06	6004.12	-0.06	-0.21	-0.15
23h	8016.07	7738.62	11016.91	-0.05	0.46	0.51

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	6182.07	6943.27	8016.07	0.17	0.37	0.21
Ebov	5755.75	6646.06	7738.62	0.21	0.43	0.22
Marv	5431.78	6004.12	11016.91	0.14	1.02	0.88

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	1203.24	1256.38	1204.62	0.06	0.0	-0.06
7h	1204.6	1318.39	1241.97	0.13	0.04	-0.09
23h	1134.59	1253.39	1222.97	0.14	0.11	-0.04

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	1203.24	1204.6	1134.59	0.0	-0.08	-0.09
Ebov	1256.38	1318.39	1253.39	0.07	-0.0	-0.07
Marv	1204.62	1241.97	1222.97	0.04	0.02	-0.02