ATF6

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
ATF6 ATF6A activating transcription factor 6 NM_007348 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene encodes a transcription factor that activates target genes for the unfolded protein response (UPR) during endoplasmic reticulum (ER) stress.

This gene shows no pronounced response to either Ebola nor Marburg virus infection.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome145 146 122 157 192 185 169 171 104
Read_Max
batR. aegyptiacusTranscriptome 113 118 67 122 90 82 64 112 104
Read_Max
bat_genomeR. aegyptiacusGenome 184 144 66 131 99 56 73 183 153
DESeq
humanH. sapiensGenome 2000.13 1792.92 1471.37 2172.86 1723.64 2209.12 1966.82 1625.28 1241.66
DESeq
batR. aegyptiacusTranscriptome 1001.61 1082.06 843.86 1015.56 1041.34 749.09 778.57 971.79 922.07
DESeq
bat_genomeR. aegyptiacusGenome 1324.32 1243.08 1077.84 1420.99 1327.08 993.42 1012.08 1164.84 1092.5

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2000.13 2172.86 1966.82 0.12 -0.02 -0.14
7h 1792.92 1723.64 1625.28 -0.06 -0.14 -0.08
23h 1471.37 2209.12 1241.66 0.59 -0.24 -0.83

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2000.13 1792.92 1471.37 -0.16 -0.44 -0.29
Ebov 2172.86 1723.64 2209.12 -0.33 0.02 0.36
Marv 1966.82 1625.28 1241.66 -0.28 -0.66 -0.39

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1001.61 1015.56 778.57 0.02 -0.36 -0.38
7h 1082.06 1041.34 971.79 -0.06 -0.16 -0.1
23h 843.86 749.09 922.07 -0.17 0.13 0.3

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1001.61 1082.06 843.86 0.11 -0.25 -0.36
Ebov 1015.56 1041.34 749.09 0.04 -0.44 -0.48
Marv 778.57 971.79 922.07 0.32 0.24 -0.08