VPS39
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| VPS39 | KIAA0770, VAM6 | vacuolar protein sorting 39 homolog (S. cerevisiae) | NM_015289 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene encodes a protein that may promote clustering and fusion of late endosomes and lysosomes. The protein may also act as an adaptor protein that modulates the transforming growth factor-beta response by coupling the transforming growth factor-beta receptor complex to the Smad pathway. Alternative splicing results in multiple transcript variants.
It is expressed under all investigated conditions in human cells and bat cells.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 64 | 107 | 94 | 85 | 142 | 171 | 102 | 129 | 100 |
Read_Max |  | R. aegyptiacus | Transcriptome | 113 | 94 | 65 | 85 | 69 | 91 | 69 | 77 | 83 |
Read_Max |  | R. aegyptiacus | Genome | 168 | 134 | 83 | 121 | 105 | 78 | 94 | 222 | 174 |
DESeq | | H. sapiens | Genome | 1585.08 | 1787.82 | 1853.61 | 1879.71 | 1911.43 | 2386.77 | 1790.5 | 1711.61 | 1859.28 |
DESeq | | R. aegyptiacus | Transcriptome | 1214.16 | 1034.86 | 985.56 | 999.99 | 988.77 | 1200.77 | 1016.63 | 929.66 | 1025.28 |
DESeq | | R. aegyptiacus | Genome | 2488.79 | 2273.5 | 2305.2 | 2352.19 | 2231.15 | 2666.95 | 2192.84 | 2297.96 | 2213.26 |