VPS39

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
VPS39 KIAA0770, VAM6 vacuolar protein sorting 39 homolog (S. cerevisiae) NM_015289 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene encodes a protein that may promote clustering and fusion of late endosomes and lysosomes. The protein may also act as an adaptor protein that modulates the transforming growth factor-beta response by coupling the transforming growth factor-beta receptor complex to the Smad pathway. Alternative splicing results in multiple transcript variants.

It is expressed under all investigated conditions in human cells and bat cells.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome64 107 94 85 142 171 102 129 100
Read_Max
batR. aegyptiacusTranscriptome 113 94 65 85 69 91 69 77 83
Read_Max
bat_genomeR. aegyptiacusGenome 168 134 83 121 105 78 94 222 174
DESeq
humanH. sapiensGenome 1585.08 1787.82 1853.61 1879.71 1911.43 2386.77 1790.5 1711.61 1859.28
DESeq
batR. aegyptiacusTranscriptome 1214.16 1034.86 985.56 999.99 988.77 1200.77 1016.63 929.66 1025.28
DESeq
bat_genomeR. aegyptiacusGenome 2488.79 2273.5 2305.2 2352.19 2231.15 2666.95 2192.84 2297.96 2213.26

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1585.08 1879.71 1790.5 0.25 0.18 -0.07
7h 1787.82 1911.43 1711.61 0.1 -0.06 -0.16
23h 1853.61 2386.77 1859.28 0.36 0.0 -0.36

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1585.08 1787.82 1853.61 0.17 0.23 0.05
Ebov 1879.71 1911.43 2386.77 0.02 0.34 0.32
Marv 1790.5 1711.61 1859.28 -0.07 0.05 0.12

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1214.16 999.99 1016.63 -0.28 -0.26 0.02
7h 1034.86 988.77 929.66 -0.07 -0.15 -0.09
23h 985.56 1200.77 1025.28 0.28 0.06 -0.23

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1214.16 1034.86 985.56 -0.23 -0.3 -0.07
Ebov 999.99 988.77 1200.77 -0.02 0.26 0.28
Marv 1016.63 929.66 1025.28 -0.13 0.01 0.14