IRF5
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| IRF5 | interferon regulatory factor 5 | NM_001098627 |  |
NONE | NONE | NONE |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene encodes a member of the interferon regulatory factor (IRF) family, a group of transcription factors with diverse roles, including virus-mediated activation of interferon, and modulation of cell growth, differentiation, apoptosis, and immune system activity.
There is no expression whatsoever in human cells, and none above noise in the bat cells blast hits. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\igvfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00199/snapshots//hg19.goi.00199_igv.eps % \caption\igv of gene IRF5. % <- say something about the figure here \endfigure }
\setcounterfigure0 \enddocument
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 2 | 1 | 2 | 1 | 0 | 2 | 1 | 1 | 2 |
Read_Max |  | R. aegyptiacus | Transcriptome | NA | NA | NA | NA | 2 | NA | NA | 1 | 2 |
Read_Max |  | R. aegyptiacus | Genome | 5 | 2 | 2 | 0 | 2 | 0 | 0 | 1 | 2 |
DESeq | | H. sapiens | Genome | 9.12 | 4.06 | 6.96 | 3.28 | 1.0 | 3.63 | 2.75 | 3.4 | 4.26 |
DESeq | | R. aegyptiacus | Transcriptome | 1.0 | 1.0 | 1.0 | 1.0 | 3.19 | 1.0 | 1.0 | 2.65 | 2.75 |
DESeq | | R. aegyptiacus | Genome | 5.16 | 1.83 | 4.46 | 0.0 | 6.7 | 0.0 | 0.0 | 1.59 | 8.56 |