IRF5

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
IRF5 interferon regulatory factor 5 NM_001098627 pdf NONE NONE NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene encodes a member of the interferon regulatory factor (IRF) family, a group of transcription factors with diverse roles, including virus-mediated activation of interferon, and modulation of cell growth, differentiation, apoptosis, and immune system activity.

There is no expression whatsoever in human cells, and none above noise in the bat cells blast hits. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\igvfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00199/snapshots//hg19.goi.00199_igv.eps % \caption\igv of gene IRF5. % <- say something about the figure here \endfigure }

\setcounterfigure0 \enddocument

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome2 1 2 1 0 2 1 1 2
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA 2 NA NA 1 2
Read_Max
bat_genomeR. aegyptiacusGenome 5 2 2 0 2 0 0 1 2
DESeq
humanH. sapiensGenome 9.12 4.06 6.96 3.28 1.0 3.63 2.75 3.4 4.26
DESeq
batR. aegyptiacusTranscriptome 1.0 1.0 1.0 1.0 3.19 1.0 1.0 2.65 2.75
DESeq
bat_genomeR. aegyptiacusGenome 5.16 1.83 4.46 0.0 6.7 0.0 0.0 1.59 8.56

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 9.12 3.28 2.75 -1.48 -1.73 -0.25
7h 4.06 1.0 3.4 -2.02 -0.26 1.77
23h 6.96 3.63 4.26 -0.94 -0.71 0.23

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 9.12 4.06 6.96 -1.17 -0.39 0.78
Ebov 3.28 1.0 3.63 -1.71 0.15 1.86
Marv 2.75 3.4 4.26 0.31 0.63 0.33

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1.0 1.0 1.0 0.0 0.0 0.0
7h 1.0 3.19 2.65 1.67 1.41 -0.27
23h 1.0 1.0 2.75 0.0 1.46 1.46

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1.0 1.0 1.0 0.0 0.0 0.0
Ebov 1.0 3.19 1.0 1.67 0.0 -1.67
Marv 1.0 2.65 2.75 1.41 1.46 0.05