PECR

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PECR HSA250303, SDR29C1, TERP peroxisomal trans-2-enoyl-CoA reductase NM_018441 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

PECR encodes for the peroxisomal trans-2-enoyl-CoA reductase.

It is downregulated in human cells after Ebola virus and Marburg virus infection after 7 h.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome128 157 170 157 184 70 161 201 64
Read_Max
batR. aegyptiacusTranscriptome 135 129 148 135 121 154 96 181 208
Read_Max
bat_genomeR. aegyptiacusGenome 199 194 203 191 152 119 126 289 321
DESeq
humanH. sapiensGenome 1072.61 1116.74 1311.53 1145.11 1051.33 422.1 986.1 1012.98 675.16
DESeq
batR. aegyptiacusTranscriptome 583.22 618.23 841.42 581.53 653.67 686.22 580.56 662.79 841.6
DESeq
bat_genomeR. aegyptiacusGenome 1173.07 1172.8 1554.28 1169.18 1255.65 1217.95 1139.15 1351.97 1568.54

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1072.61 1145.11 986.1 0.09 -0.12 -0.22
7h 1116.74 1051.33 1012.98 -0.09 -0.14 -0.05
23h 1311.53 422.1 675.16 -1.64 -0.96 0.68

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1072.61 1116.74 1311.53 0.06 0.29 0.23
Ebov 1145.11 1051.33 422.1 -0.12 -1.44 -1.32
Marv 986.1 1012.98 675.16 0.04 -0.55 -0.59

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 583.22 581.53 580.56 -0.0 -0.01 -0.0
7h 618.23 653.67 662.79 0.08 0.1 0.02
23h 841.42 686.22 841.6 -0.29 0.0 0.29

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 583.22 618.23 841.42 0.08 0.53 0.44
Ebov 581.53 653.67 686.22 0.17 0.24 0.07
Marv 580.56 662.79 841.6 0.19 0.54 0.34