ZNF445

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
ZNF445 ZKSCAN15, ZNF168, ZSCAN47 zinc finger protein 445 NM_181489 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

May be involved in transcriptional regulation (uniprot).

The gene is downregulated to half the level 23 h after infection with Ebola virus in human cells and only slightly downregulated in bat cells 23 h after infection. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\igvfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00411/snapshots//hg19.goi.00411_igv.eps % \caption\igv of gene ZNF445. % <- say something about the figure here \endfigure }

\sashimifigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00411/snapshots//hg19.goi.00411_sashimi.eps % \caption\sashimi of gene ZNF445. % <- say something about the figure here \endfigure }

\ucscfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00411/snapshots//hg19.goi.00411_ucsc.eps % \caption\ucsc of gene ZNF445. % <- say something about the figure here \endfigure }

\setcounterfigure0 \enddocument

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome236 184 209 184 225 112 207 200 132
Read_Max
batR. aegyptiacusTranscriptome 155 112 65 101 71 89 100 96 72
Read_Max
bat_genomeR. aegyptiacusGenome 156 101 60 106 61 73 85 119 106
DESeq
humanH. sapiensGenome 10211.79 7540.92 7441.23 8188.82 7206.18 3626.37 7934.44 6333.45 5798.73
DESeq
batR. aegyptiacusTranscriptome 1390.59 1348.01 1243.3 1311.32 1255.97 1490.77 1219.08 1233.7 1103.13
DESeq
bat_genomeR. aegyptiacusGenome 2300.59 2042.59 1907.98 2268.25 2107.26 2532.5 2303.04 1966.51 1869.07

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 10211.79 8188.82 7934.44 -0.32 -0.36 -0.05
7h 7540.92 7206.18 6333.45 -0.07 -0.25 -0.19
23h 7441.23 3626.37 5798.73 -1.04 -0.36 0.68

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 10211.79 7540.92 7441.23 -0.44 -0.46 -0.02
Ebov 8188.82 7206.18 3626.37 -0.18 -1.18 -0.99
Marv 7934.44 6333.45 5798.73 -0.33 -0.45 -0.13

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1390.59 1311.32 1219.08 -0.08 -0.19 -0.11
7h 1348.01 1255.97 1233.7 -0.1 -0.13 -0.03
23h 1243.3 1490.77 1103.13 0.26 -0.17 -0.43

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1390.59 1348.01 1243.3 -0.04 -0.16 -0.12
Ebov 1311.32 1255.97 1490.77 -0.06 0.19 0.25
Marv 1219.08 1233.7 1103.13 0.02 -0.14 -0.16