CXCL13

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
CXCL13 Angie, BCA-1,BLC, BLR1L, ANGIE, ANGIE2 chemokine (C-X-C motif) ligand 13 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

B lymphocyte chemoattractant. Chemotactic for B-lymphocytes but not for T-lymphocytes, monocytes and neutrophils. Does not induce calcium release in B- lymphocytes. Binds to BLR1/CXCR5. There is an interesting expression pattern in the intronic position of the gene in human genes, with a possible homologue in bats. Seem like a ncRNA.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome355 318 428 258 449 84 297 334 252
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 0 0 0 0 0 0 0 0 0
DESeq
humanH. sapiensGenome 50.72 50.97 68.51 38.64 45.71 14.16 36.09 40.97 53.19
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 50.72 38.64 36.09 -0.39 -0.49 -0.1
7h 50.97 45.71 40.97 -0.16 -0.32 -0.16
23h 68.51 14.16 53.19 -2.27 -0.37 1.91

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 50.72 50.97 68.51 0.01 0.43 0.43
Ebov 38.64 45.71 14.16 0.24 -1.45 -1.69
Marv 36.09 40.97 53.19 0.18 0.56 0.38

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA