FAS

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
FAS APO-1, APT1, CD95, FAS1, TNFRSF6,CD95, APO-1 Fas cell surface death receptor pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The protein encoded by this gene is a member of the TNF-receptor superfamily. This receptor contains a death domain. It has been shown to play a central role in the physiological regulation of programmed cell death, and has been implicated in the pathogenesis of various malignancies and diseases of the immune system. The interaction of this receptor with its ligand allows the formation of a death-inducing signaling complex that includes Fas-associated death domain protein (FADD), caspase 8, and caspase 10. The autoproteolytic processing of the caspases in the complex triggers a downstream caspase cascade, and leads to apoptosis. This receptor has been also shown to activate NF-kappaB, MAPK3/ERK1, and MAPK8/JNK, and is found to be involved in transducing the proliferating signals in normal diploid fibroblast and T cells. Several alternatively spliced transcript variants have been described, some of which are candidates for nonsense-mediated mRNA decay (NMD). The isoforms lacking the transmembrane domain may negatively regulate the apoptosis mediated by the full length isoform.

It is not expressed in human cells under any of the investigated conditions. In bat cells it is constantly expressed at a low level.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome1 0 1 0 1 0 0 0 0
Read_Max
batR. aegyptiacusTranscriptome 78 58 31 32 29 25 41 48 60
Read_Max
bat_genomeR. aegyptiacusGenome 81 43 37 58 30 25 40 64 71
DESeq
humanH. sapiensGenome 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0
DESeq
batR. aegyptiacusTranscriptome 230.36 256.06 178.12 137.43 135.7 124.19 232.38 172.85 203.06
DESeq
bat_genomeR. aegyptiacusGenome 460.63 300.27 334.73 461.15 337.07 262.39 453.19 329.87 398.99

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1.0 1.0 1.0 0.0 0.0 0.0
7h 1.0 1.0 1.0 0.0 0.0 0.0
23h 1.0 1.0 1.0 0.0 0.0 0.0

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1.0 1.0 1.0 0.0 0.0 0.0
Ebov 1.0 1.0 1.0 0.0 0.0 0.0
Marv 1.0 1.0 1.0 0.0 0.0 0.0

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 230.36 137.43 232.38 -0.75 0.01 0.76
7h 256.06 135.7 172.85 -0.92 -0.57 0.35
23h 178.12 124.19 203.06 -0.52 0.19 0.71

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 230.36 256.06 178.12 0.15 -0.37 -0.52
Ebov 137.43 135.7 124.19 -0.02 -0.15 -0.13
Marv 232.38 172.85 203.06 -0.43 -0.19 0.23