PDCD6IP
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| PDCD6IP | Programmed Cell Death 6 Interacting Protein, DRIP4, AIP1, HP95,Alix, Hp95 | programmed cell death 6 interacting protein |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene encodes a protein that functions within the ESCRT pathway in the abscission stage of cytokinesis, in intralumenal endosomal vesicle formation, and in enveloped virus budding. Studies using mouse cells have shown that overexpression of this protein can block apoptosis. In addition, the product of this gene binds to the product of the PDCD6 gene, a protein required for apoptosis, in a calcium-dependent manner. This gene product also binds to endophilins, proteins that regulate membrane shape during endocytosis. Overexpression of this gene product and endophilins results in cytoplasmic vacuolization, which may be partly responsible for the protection against cell death. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene. Related pseudogenes have been identified on chromosome 15.
This gene is expressed in all samples.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 498 | 396 | 440 | 356 | 513 | 546 | 513 | 532 | 410 |
Read_Max |  | R. aegyptiacus | Transcriptome | 691 | 590 | 379 | 601 | 484 | 538 | 501 | 656 | 546 |
Read_Max |  | R. aegyptiacus | Genome | 759 | 641 | 323 | 540 | 422 | 309 | 450 | 792 | 633 |
DESeq | | H. sapiens | Genome | 7596.68 | 6703.6 | 7002.4 | 6752.7 | 6517.61 | 7978.12 | 6612.49 | 6315.87 | 6983.94 |
DESeq | | R. aegyptiacus | Transcriptome | 8047.87 | 7315.16 | 6459.26 | 7896.81 | 7671.01 | 7700.09 | 7614.31 | 7873.11 | 7092.26 |
DESeq | | R. aegyptiacus | Genome | 9528.92 | 9399.74 | 7424.39 | 8876.49 | 9301.86 | 8991.66 | 9055.86 | 9367.07 | 8441.19 |