TFRC

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
TFRC	CD71, T9, TFR, TFR1, TR, TRFR, p90	transferrin receptor		pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens transferrin receptor (p90, CD71) (TFRC), transcript variant 1, mRNA. The gene is highly expressed in human, and transiently upregulated upon EBOV expression (high in 7h, down agian in 23h). The bat homolog is stably expressed.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	2465	2598	2627	2564	3759	2442	3180	3006	2338
Read_Max		R. aegyptiacus	Transcriptome	1128	1099	794	843	851	1091	893	918	1071
Read_Max		R. aegyptiacus	Genome	1474	1001	719	1161	767	697	823	1231	1250
DESeq		H. sapiens	Genome	34504.77	30029.12	34258.41	34800.96	33404.33	27401.13	33754.96	27369.16	33240.11
DESeq		R. aegyptiacus	Transcriptome	10382.62	10009.19	7473.14	9301.44	9592.89	11239.1	11053.87	9569.32	8134.04
DESeq		R. aegyptiacus	Genome	14354.39	12760.25	9541.02	14496.26	13807.69	16841.09	16114.54	13085.19	11788.9

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	34504.77	34800.96	33754.96	0.01	-0.03	-0.04
7h	30029.12	33404.33	27369.16	0.15	-0.13	-0.29
23h	34258.41	27401.13	33240.11	-0.32	-0.04	0.28

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	34504.77	30029.12	34258.41	-0.2	-0.01	0.19
Ebov	34800.96	33404.33	27401.13	-0.06	-0.34	-0.29
Marv	33754.96	27369.16	33240.11	-0.3	-0.02	0.28

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	10382.62	9301.44	11053.87	-0.16	0.09	0.25
7h	10009.19	9592.89	9569.32	-0.06	-0.06	-0.0
23h	7473.14	11239.1	8134.04	0.59	0.12	-0.47

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	10382.62	10009.19	7473.14	-0.05	-0.47	-0.42
Ebov	9301.44	9592.89	11239.1	0.04	0.27	0.23
Marv	11053.87	9569.32	8134.04	-0.21	-0.44	-0.23