TFRC

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TFRC CD71, T9, TFR, TFR1, TR, TRFR, p90 transferrin receptor pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens transferrin receptor (p90, CD71) (TFRC), transcript variant 1, mRNA. The gene is highly expressed in human, and transiently upregulated upon EBOV expression (high in 7h, down agian in 23h). The bat homolog is stably expressed.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome2465 2598 2627 2564 3759 2442 3180 3006 2338
Read_Max
batR. aegyptiacusTranscriptome 1128 1099 794 843 851 1091 893 918 1071
Read_Max
bat_genomeR. aegyptiacusGenome 1474 1001 719 1161 767 697 823 1231 1250
DESeq
humanH. sapiensGenome 34504.77 30029.12 34258.41 34800.96 33404.33 27401.13 33754.96 27369.16 33240.11
DESeq
batR. aegyptiacusTranscriptome 10382.62 10009.19 7473.14 9301.44 9592.89 11239.1 11053.87 9569.32 8134.04
DESeq
bat_genomeR. aegyptiacusGenome 14354.39 12760.25 9541.02 14496.26 13807.69 16841.09 16114.54 13085.19 11788.9

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 34504.77 34800.96 33754.96 0.01 -0.03 -0.04
7h 30029.12 33404.33 27369.16 0.15 -0.13 -0.29
23h 34258.41 27401.13 33240.11 -0.32 -0.04 0.28

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 34504.77 30029.12 34258.41 -0.2 -0.01 0.19
Ebov 34800.96 33404.33 27401.13 -0.06 -0.34 -0.29
Marv 33754.96 27369.16 33240.11 -0.3 -0.02 0.28

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 10382.62 9301.44 11053.87 -0.16 0.09 0.25
7h 10009.19 9592.89 9569.32 -0.06 -0.06 -0.0
23h 7473.14 11239.1 8134.04 0.59 0.12 -0.47

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 10382.62 10009.19 7473.14 -0.05 -0.47 -0.42
Ebov 9301.44 9592.89 11239.1 0.04 0.27 0.23
Marv 11053.87 9569.32 8134.04 -0.21 -0.44 -0.23