CHMP7

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
CHMP7 Charged Multivesicular Body Protein 7,MGC29816 charged multivesicular body protein 7 NM_152272 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens charged multivesicular body protein 7 (CHMP7), mRNA. Expressed in all samples, some variation in expression level.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome174 199 143 170 222 203 223 309 176
Read_Max
batR. aegyptiacusTranscriptome 129 132 129 134 108 125 91 140 157
Read_Max
bat_genomeR. aegyptiacusGenome 169 150 113 168 112 93 101 217 235
DESeq
humanH. sapiensGenome 1534.34 1790.88 1591.51 1536.36 1786.24 1839.34 1731.73 1908.25 1782.07
DESeq
batR. aegyptiacusTranscriptome 918.43 991.29 1007.55 1056.77 1142.08 1046.79 823.07 1047.81 1068.14
DESeq
bat_genomeR. aegyptiacusGenome 1536.59 1675.69 1553.16 1745.87 1852.78 1807.99 1415.79 1677.08 1703.82

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1534.34 1536.36 1731.73 0.0 0.17 0.17
7h 1790.88 1786.24 1908.25 -0.0 0.09 0.1
23h 1591.51 1839.34 1782.07 0.21 0.16 -0.05

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1534.34 1790.88 1591.51 0.22 0.05 -0.17
Ebov 1536.36 1786.24 1839.34 0.22 0.26 0.04
Marv 1731.73 1908.25 1782.07 0.14 0.04 -0.1

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 918.43 1056.77 823.07 0.2 -0.16 -0.36
7h 991.29 1142.08 1047.81 0.2 0.08 -0.12
23h 1007.55 1046.79 1068.14 0.06 0.08 0.03

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 918.43 991.29 1007.55 0.11 0.13 0.02
Ebov 1056.77 1142.08 1046.79 0.11 -0.01 -0.13
Marv 823.07 1047.81 1068.14 0.35 0.38 0.03