GIT2

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
GIT2 CAT-2, CAT2,KIAA0148 G protein-coupled receptor kinase interacting ArfGAP 2 NM_057169 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The G protein-coupled receptor kinase interacting ArfGAP 2 gene is involved in Endocytosis. There was no particularly interesting differential expression pattern in the samples analyzed.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome143 135 93 111 149 119 133 140 81
Read_Max
batR. aegyptiacusTranscriptome 200 162 145 189 141 183 125 198 171
Read_Max
bat_genomeR. aegyptiacusGenome 228 199 127 160 126 113 109 238 195
DESeq
humanH. sapiensGenome 2927.65 2923.96 2546.6 2670.2 2613.01 2090.68 2725.6 2646.85 2106.1
DESeq
batR. aegyptiacusTranscriptome 2245.02 2091.41 2281.61 2484.29 2321.5 2300.46 1934.36 2308.6 2077.56
DESeq
bat_genomeR. aegyptiacusGenome 2906.46 3269.24 2868.66 2697.81 3005.75 2995.92 2398.63 3004.47 2640.5

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2927.65 2670.2 2725.6 -0.13 -0.1 0.03
7h 2923.96 2613.01 2646.85 -0.16 -0.14 0.02
23h 2546.6 2090.68 2106.1 -0.28 -0.27 0.01

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2927.65 2923.96 2546.6 -0.0 -0.2 -0.2
Ebov 2670.2 2613.01 2090.68 -0.03 -0.35 -0.32
Marv 2725.6 2646.85 2106.1 -0.04 -0.37 -0.33

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2245.02 2484.29 1934.36 0.15 -0.21 -0.36
7h 2091.41 2321.5 2308.6 0.15 0.14 -0.01
23h 2281.61 2300.46 2077.56 0.01 -0.14 -0.15

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2245.02 2091.41 2281.61 -0.1 0.02 0.13
Ebov 2484.29 2321.5 2300.46 -0.1 -0.11 -0.01
Marv 1934.36 2308.6 2077.56 0.26 0.1 -0.15