GIT2

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
GIT2	CAT-2, CAT2,KIAA0148	G protein-coupled receptor kinase interacting ArfGAP 2	NM_057169	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The G protein-coupled receptor kinase interacting ArfGAP 2 gene is involved in Endocytosis. There was no particularly interesting differential expression pattern in the samples analyzed.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	143	135	93	111	149	119	133	140	81
Read_Max		R. aegyptiacus	Transcriptome	200	162	145	189	141	183	125	198	171
Read_Max		R. aegyptiacus	Genome	228	199	127	160	126	113	109	238	195
DESeq		H. sapiens	Genome	2927.65	2923.96	2546.6	2670.2	2613.01	2090.68	2725.6	2646.85	2106.1
DESeq		R. aegyptiacus	Transcriptome	2245.02	2091.41	2281.61	2484.29	2321.5	2300.46	1934.36	2308.6	2077.56
DESeq		R. aegyptiacus	Genome	2906.46	3269.24	2868.66	2697.81	3005.75	2995.92	2398.63	3004.47	2640.5

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	2927.65	2670.2	2725.6	-0.13	-0.1	0.03
7h	2923.96	2613.01	2646.85	-0.16	-0.14	0.02
23h	2546.6	2090.68	2106.1	-0.28	-0.27	0.01

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	2927.65	2923.96	2546.6	-0.0	-0.2	-0.2
Ebov	2670.2	2613.01	2090.68	-0.03	-0.35	-0.32
Marv	2725.6	2646.85	2106.1	-0.04	-0.37	-0.33

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	2245.02	2484.29	1934.36	0.15	-0.21	-0.36
7h	2091.41	2321.5	2308.6	0.15	0.14	-0.01
23h	2281.61	2300.46	2077.56	0.01	-0.14	-0.15

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	2245.02	2091.41	2281.61	-0.1	0.02	0.13
Ebov	2484.29	2321.5	2300.46	-0.1	-0.11	-0.01
Marv	1934.36	2308.6	2077.56	0.26	0.1	-0.15