SMAD5

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
SMAD5 DWFC, JV5-1, MADH5,Dwfc SMAD family member 5 NM_005903 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

SMAD family member 5 is involved in the TGF-beta signaling pathway and Signaling pathways regulating pluripotency of stem cells. It does not present any particular differential expression pattern in the analyzed samples

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome309 225 248 281 325 283 336 330 163
Read_Max
batR. aegyptiacusTranscriptome 379 333 181 337 257 329 298 331 214
Read_Max
bat_genomeR. aegyptiacusGenome 496 359 169 340 223 200 269 426 269
DESeq
humanH. sapiensGenome 5274.85 3928.53 4511.4 4652.71 4361.67 3725.06 4742.29 3725.17 3915.45
DESeq
batR. aegyptiacusTranscriptome 2986.86 2534.36 1840.63 2605.16 2104.67 2252.98 2744.19 2315.21 1506.37
DESeq
bat_genomeR. aegyptiacusGenome 7087.39 6141.46 4027.96 6116.47 5590.71 6101.49 7109.29 5617.23 4322.06

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 5274.85 4652.71 4742.29 -0.18 -0.15 0.03
7h 3928.53 4361.67 3725.17 0.15 -0.08 -0.23
23h 4511.4 3725.06 3915.45 -0.28 -0.2 0.07

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 5274.85 3928.53 4511.4 -0.43 -0.23 0.2
Ebov 4652.71 4361.67 3725.06 -0.09 -0.32 -0.23
Marv 4742.29 3725.17 3915.45 -0.35 -0.28 0.07

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2986.86 2605.16 2744.19 -0.2 -0.12 0.08
7h 2534.36 2104.67 2315.21 -0.27 -0.13 0.14
23h 1840.63 2252.98 1506.37 0.29 -0.29 -0.58

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2986.86 2534.36 1840.63 -0.24 -0.7 -0.46
Ebov 2605.16 2104.67 2252.98 -0.31 -0.21 0.1
Marv 2744.19 2315.21 1506.37 -0.25 -0.87 -0.62