SMAD5

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
SMAD5	DWFC, JV5-1, MADH5,Dwfc	SMAD family member 5	NM_005903	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

SMAD family member 5 is involved in the TGF-beta signaling pathway and Signaling pathways regulating pluripotency of stem cells. It does not present any particular differential expression pattern in the analyzed samples

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	309	225	248	281	325	283	336	330	163
Read_Max		R. aegyptiacus	Transcriptome	379	333	181	337	257	329	298	331	214
Read_Max		R. aegyptiacus	Genome	496	359	169	340	223	200	269	426	269
DESeq		H. sapiens	Genome	5274.85	3928.53	4511.4	4652.71	4361.67	3725.06	4742.29	3725.17	3915.45
DESeq		R. aegyptiacus	Transcriptome	2986.86	2534.36	1840.63	2605.16	2104.67	2252.98	2744.19	2315.21	1506.37
DESeq		R. aegyptiacus	Genome	7087.39	6141.46	4027.96	6116.47	5590.71	6101.49	7109.29	5617.23	4322.06

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	5274.85	4652.71	4742.29	-0.18	-0.15	0.03
7h	3928.53	4361.67	3725.17	0.15	-0.08	-0.23
23h	4511.4	3725.06	3915.45	-0.28	-0.2	0.07

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	5274.85	3928.53	4511.4	-0.43	-0.23	0.2
Ebov	4652.71	4361.67	3725.06	-0.09	-0.32	-0.23
Marv	4742.29	3725.17	3915.45	-0.35	-0.28	0.07

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	2986.86	2605.16	2744.19	-0.2	-0.12	0.08
7h	2534.36	2104.67	2315.21	-0.27	-0.13	0.14
23h	1840.63	2252.98	1506.37	0.29	-0.29	-0.58

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	2986.86	2534.36	1840.63	-0.24	-0.7	-0.46
Ebov	2605.16	2104.67	2252.98	-0.31	-0.21	0.1
Marv	2744.19	2315.21	1506.37	-0.25	-0.87	-0.62