SPIRE2

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
SPIRE2 SPIR23,spir-2, KIAA1832 spire-type actin nucleation factor 2 XM_047462 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The gene SPIRE2 is weakly expressed in human and bat datasets. SPIRE2 (spire-type actin nucleation factor 2) is a protein-coding gene. GO annotations related to this gene include actin binding. An important paralog of this gene is SPIRE1.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome36 58 53 41 52 104 51 54 46
Read_Max
batR. aegyptiacusTranscriptome 5 2 5 2 2 1 3 3 7
Read_Max
bat_genomeR. aegyptiacusGenome 19 13 9 18 6 7 10 19 15
DESeq
humanH. sapiensGenome 947.8 976.0 1321.46 814.31 1004.18 1955.14 855.4 1093.71 1198.17
DESeq
batR. aegyptiacusTranscriptome 11.92 6.45 10.77 5.58 5.38 2.28 7.67 5.96 17.62
DESeq
bat_genomeR. aegyptiacusGenome 154.69 160.63 174.06 174.78 123.89 101.82 172.05 162.55 214.9

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 947.8 814.31 855.4 -0.22 -0.15 0.07
7h 976.0 1004.18 1093.71 0.04 0.16 0.12
23h 1321.46 1955.14 1198.17 0.57 -0.14 -0.71

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 947.8 976.0 1321.46 0.04 0.48 0.44
Ebov 814.31 1004.18 1955.14 0.3 1.26 0.96
Marv 855.4 1093.71 1198.17 0.35 0.49 0.13

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 11.92 5.58 7.67 -1.1 -0.64 0.46
7h 6.45 5.38 5.96 -0.26 -0.11 0.15
23h 10.77 2.28 17.62 -2.24 0.71 2.95

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 11.92 6.45 10.77 -0.89 -0.15 0.74
Ebov 5.58 5.38 2.28 -0.05 -1.29 -1.24
Marv 7.67 5.96 17.62 -0.36 1.2 1.56