ITGA10

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
ITGA10 ITGA10, PRO827 integrin, alpha 10 NM_003637 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Integrins are integral membrane proteins composed of an alpha chain and a beta chain, and are known to participate in cell adhesion as well as cell-surface mediated signalling. The I-domain containing alpha 10 combines with the integrin beta 1 chain (ITGB1) to form a novel collagen type II-binding integrin expressed in cartilage tissue.

ITGA10 is not expressed in humans nor in bats in examined conditions.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome2 4 2 4 3 6 2 4 3
Read_Max
batR. aegyptiacusTranscriptome 5 5 2 3 3 4 2 5 6
Read_Max
bat_genomeR. aegyptiacusGenome 28 31 20 26 22 18 23 39 69
DESeq
humanH. sapiensGenome 4.04 22.42 17.88 24.95 23.76 68.11 6.26 19.39 24.92
DESeq
batR. aegyptiacusTranscriptome 17.8 24.6 5.89 8.33 10.86 4.85 9.9 18.35 18.49
DESeq
bat_genomeR. aegyptiacusGenome 166.72 190.75 200.84 208.36 176.35 184.06 170.93 200.62 307.37

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 4.04 24.95 6.26 2.63 0.63 -1.99
7h 22.42 23.76 19.39 0.08 -0.21 -0.29
23h 17.88 68.11 24.92 1.93 0.48 -1.45

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 4.04 22.42 17.88 2.47 2.15 -0.33
Ebov 24.95 23.76 68.11 -0.07 1.45 1.52
Marv 6.26 19.39 24.92 1.63 1.99 0.36

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 17.8 8.33 9.9 -1.1 -0.85 0.25
7h 24.6 10.86 18.35 -1.18 -0.42 0.76
23h 5.89 4.85 18.49 -0.28 1.65 1.93

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 17.8 24.6 5.89 0.47 -1.6 -2.06
Ebov 8.33 10.86 4.85 0.38 -0.78 -1.16
Marv 9.9 18.35 18.49 0.89 0.9 0.01