Supplemental material

Promoter associated RNAs

Stefanie Wehner, Anja K. Dörrich, Philipp Ciba, Annegret Wilde, and Manja Marz

Organism	Assembly	Coverage	real genomesize (Mbp)	Mbp expected	Download date	Download
Homo sapiens	f		3168	3423	3.06.12	Download link
Pan troglodytes	f	6X	3310	3594	5.06.12	Download link
Pongo pygmaeus	f	6X	3447	3703	3.07.12	Download link
Macaca mulatta	f	5.1X	3097	3291	7.06.12	Download link
Callithrix jacchus Marmoset	c	6X	2915	3355	15.06.12	Download link
Tarsius syrichta	s	1.82X	3187	5144	4.07.12	Download link
Otolemur garnettii	s		2519	3531	7.06.12	Download link
Microcebus murinus	s	1.93X	2910	3051	4.07.12	Download link
Mus musculus	f	25X	2655	3216	20.06.12	Download link
Rattus norvegicus	f		2719	3286	7.06.12	Download link
Dipodomys ordii	s	1.85X	2165	4377	4.07.12	Download link
Spermophilus tridecemlineatus	s		2478	3932	4.07.12	Download link
Cavia porcellus	s	6.79X	2723	3751	4.07.12	Download link
Ochotona princeps	s	1.93X	4782	3107	4.07.12	Download link
Oryctolagus cuniculus	s	7.48	2737	3107	1.06.12	Download link
Tupaia belangeri	s	2X	3670	3472	7.06.12	Download link
Felis catus	s	2.87X	3160	3040	4.07.12	Download link
Canis familiaris	f	7.6X	2532	3051	26.06.12	Download link
Vicugna pacos	s	2.51X	2968	3169	26.06.12	Download link
Tursiops truncatus	s	2.59X	2522	3081	1.06.12	Download link
Bos taurus	f	9.5X	2670	3537	4.07.12	Download link
Sus scrofa	f	15.3X	2809	3059	5.06.12	Download link
Equus caballus	f	6.8X	2475	3149	25.05.12	Download link
Myotis lucifugus	s	7X	2035	2248	29.05.12	Download link
Pteropus vampyrus	s	2.63X	2000	2318	20.06.12	Download link
Erinaceus europaeus	s	1.86X	3368	3579	3.07.12	Download link
Sorex araneus	s	1.9X	2944	2846	3.07.12	Download link
Echinops telfairi	s	2X	3824	4919	15.06.12	Download link "
Procavia capensis	s	2.19X	2993	3971	4.07.12	Download link
Dasypus novemcinctus	s	2X	4824	5291	3.07.12	Download link
Choloepus hoffmanni	s	2.05X	2467	4137	29.05.12	Download link
Monodelphis domestica	f	7.33X	3606	4592	20.6.12	Download link
Macropus eugenii	s	2X	2956	4224	15.6.12	Download link
Ornithorhynchus anatinus	f	6	2073	2993	26.6.12	Download link
Anolis carolinensis T	f	7.1X	1799	2242	22.5.12	Download link
Taeniopygia guttata	f	6X	1233	1222	6.8.12	Download link
Gallus gallus	f	7.1X	1108	1222	8.6.12	Download link

Gff and Fasta files

	pRNA		rRNA
Organism	gff	fasta	gff
Homo sapiens	pRNA.gff (93)	pRNA.fa	rRNA.gff (2)
Pan troglodytes	pRNA.gff (95)	pRNA.fa	rRNA.gff (15)
Pongo pygmaeus	pRNA.gff (84)	pRNA.fa	rRNA.gff (1)
Macaca mulata	pRNA.gff (89)	pRNA.fa	rRNA.gff (2)
Callithrix jacchus Marmoset	pRNA.gff (60)	pRNA.fa	rRNA.gff (2)
Tarsius syrichta	pRNA.gff (58)	pRNA.fa
Otolemur garnettii	pRNA.gff (30)	pRNA.fa
Microcebus murinus	pRNA.gff (102)	pRNA.fa	rRNA.gff (1)
Mus musculus	pRNA.gff (8)	pRNA.fa	rRNA.gff (1)
Rattus norvegicus	pRNA.gff (5)	pRNA.fa
Dipodomys ordii	pRNA.gff (45)	pRNA.fa	rRNA.gff (5)
Spermophilus tridecemlineatus	pRNA.gff (23)	pRNA.fa
Cavia porcellus	pRNA.gff (11)	pRNA.fa	rRNA.gff (2)
Ochotona princeps	pRNA.gff (53)	pRNA.fa	rRNA.gff (7)
Oryctolagus cuniculus	pRNA.gff (21)	pRNA.fa	rRNA.gff (4)
Tupaia belangeri	pRNA.gff (46)	pRNA.fa	rRNA.gff (6)
Felis catus	pRNA.gff (60)	pRNA.fa	rRNA.gff (1)
Canis familiaris	pRNA.gff (53)	pRNA.fa	rRNA.gff (3)
Vicugna pacos	pRNA.gff (55)	pRNA.fa	rRNA.gff (1)
Tursiops truncatus	pRNA.gff (102)	pRNA.fa	rRNA.gff (1)
Bos taurus	pRNA.gff (46)	pRNA.fa
Sus scrofa	pRNA.gff (51)	pRNA.fa
Equus caballus	pRNA.gff (130)	pRNA.fa	rRNA.gff (5)
Myotis lucifugus	pRNA.gff (50)	pRNA.fa	rRNA.gff (2)
Pteropus vampyrus	pRNA.gff (67)	pRNA.fa	rRNA.gff (4)
Erinaceus europaeus	pRNA.gff (23)	pRNA.fa	rRNA.gff (2)
Sorex araneus	pRNA.gff (17)	pRNA.fa	rRNA.gff (1)
Echinops telfairi	pRNA.gff (23)	pRNA.fa	rRNA.gff (1)
Procavia capensis	pRNA.gff (297)	pRNA.fa	rRNA.gff (2)
Dasypus novemcinctus	pRNA.gff (53)	pRNA.fa	rRNA.gff (5)
Choloepus hoffmanni	pRNA.gff (69)	pRNA.fa