Mx1 in bats

fragment_1

D E C M K
R S T F Y
N Q G L V
I A W H P

Input
Alignment
Tree
Codeml
Recombination
Significant sites
go back to full alignment

Parameters

PoSeiDon v1.1


Fragment_1
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--- --- --- --- --- --- --- ATG GGT GTC CCT CAA GGG AAA ATC CAA AAC CAT GAT TTG GCC TTT GCA GCC AGT CCT CCG TTA CCA AAT ACT GAG GTG --- --- TCT GAG AAG AAT CCG GAA AAA AGG GAA GAG AGC AGC CTA TGC AGC CAC TAC GAG GAG AAG GTC CGC CCC TGC ATC GAC CTC ATC GAC TCC CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATT GCG GTC ATC GGG GAC CAG AGC TCG GGC AAG AGC TCC GTG CTG GAG GCC CTG TCC GGC GTC GCC CTC CCC AGG GGC AGC
--- --- --- --- --- --- --- ATG GGT GTT CCT CAA GTG AAA GTC GAA AGT CAT GGC TCG GCC TCT GCA CCC ATT CCT CAG TTA CCA AAT GCT GAG GTG --- --- CCT GAG AAG AAT CTG GAC AAA GGG GAC GAG ATA AAC CTG TGC AGC TAC TAC GAG GAG AAG GTC CGC CCC TGC ATC GAC CTC ATC GAC TCT CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATC GCG GTC ATC GGG GAC CAG AGC TCG GGC AAG AGC TCC GTG CTG GAG GCC CTG TCG GGC GTC GCC CTC CCC AGA GGC AGC
--- --- --- --- --- --- --- ATG GGT GTT CCT CAA GTG AAA GTC CAA GGT CAT AGC TCG GAC CTT GCA TCC GCG CCT CAG TTA CCA AAT GCT GAG GTG --- --- CCT GAG AAG AAT CTA AAA AAA GGG GAA GAG ACA GAC CTG TGC AGC CAC TAC GAG GAG AAG GTC CGC CCC TGC ATC GAC CTC GTC GAC TCT CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATC GCG GTC ATC GGG GAC CAG AGC TCG GGC AAG AGC TCG GTG CTG GAG GCC CTG TCG GGC GTT GCC CTC CCC AGA GGC AGC
ATG AAT CCT CCT ACA GTG AAG AGG AGT CCT CTT AAA GTG AAA GTC AAA AAT CAT AAT TCG GCC TCT GCG TCC AGT CCT CGG TTA CCA GAT GCT AAG GTG --- --- TCT GAG GAG AAT CTG GAA AAA GGC ACC GAG AGC AGC CTG TGC AGC TAC TAC GAG GAG AAA ATC CGC CCC TGC ATC GAC CTC ATC GAC TCT CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATC GCG GTC ATC GGG GAC CAG AGC TCG GGC AAG AGC TCC GTG CTG GAG GCC CTG TCG GGC GTC GCC CTG CCC AGA GGC AGC
--- --- --- --- --- --- --- --- --- --- --- --- ATG GAA ACA GCA AGT CCT GAT TCC ACC CCT GCA CCC AGT CAT CCC TTA CCA AAT GGA GAT GCT GTT ACG CCG GAG GGA AAT CTG GAG ACG ACG TTG GAG AAT AGC CTG TGC AGC CAG TAC GAG GAG AAG GTG CGC CCC TGC ATC GAC CTC ATC GAC TCC CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATC GCC GTC ATC GGG GAC CAG AGC TCG GGA AAG AGC TCC GTG CTG GAG GCG CTG TCT GGT GTC TCC CTC CCC AGA GGC AGC
--- --- --- --- --- --- --- --- --- --- --- --- ATG GAA ACA GCA ACT CCT GAC TCC ACC CTT GCA TCC AGT CAT CCC TTA CCA AAT GGA GAT GCT GTT ACG CCG GAG GGA AAT CTG GAG ACA ACG TTG GAG AAT AGC CTG TGC AGC CAG TAC GAG GAG AAG GTG CGC CCC TGC ATC GAC CTC ATC GAC TCC CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATC GCC GTC ATC GGG GAC CAG AGC TCG GGC AAG AGC TCC GTG CTG GAG GCG CTG TCT GGT GTC TCC CTC CCC AGA GGC AGC
--- --- --- --- --- --- --- --- --- --- --- --- ATG GAA ACG GCA ACT CCC GAC TCC ACC TCC GCG TCT GGC CAG CCC TTA CCC AAT GGA GAT GCT GTT GGG CCA GAG GTA AAT CCG GAG GCA ATG CTG GAG ACG AGC TTG TGC AGC CAG TAC GAG GAG AAG GTG CGC CCC TGC ATC GAC CTC ATC GAC TCC CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATC GCC GTC ATC GGG GAC CAG AGC TCG GGC AAG AGC TCA GTG CTG GAG GCG CTG TCT GGT GTC TCC CTC CCC AGA GGC AGC
--- --- --- --- --- --- --- --- --- --- --- --- ATG GAG ACA GCG ACT CCC GAC TCC GCC TCT GCA TCC AGT CAG CCC TTA CCC AAT GGA GAT GCT GTG GTG CCA GAA GTA AAC ATG GAG ACA ATG CTG GAG ACC AGC CTG TGC AGC CAG TAC GAG GAG AAG GTG CGG CCC TGC ATC GAC CTC ATC GAC TCC CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATC GCC GTC ATC GGG GAC CAG AGC TCG GGC AAG AGC TCC GTG CTG GAG GCG CTG TCG GGT GTC GCC CTC CCC AGA GGC AGC
--- --- --- --- --- --- --- --- --- --- --- --- ATG GAA ACA GCA ACT CCT GAT TCC ACC CCT GCA TCC AGT CAT CCC TTA CCA AAT GGA GAT GCT GTT GAG CCG GAG GGA AAT CTG GAG ACA ACG TTG GAG AAT AGC CTG TGC AGC CAG TAC GAG GAG AAG GTG CGC CCC TGC ATC GAC CTC ATT GAC TCC CTG CGG GCC CTG GGT GTG GAG CAG GAC CTG GCC CTG CCT GCC ATC GCC GTC ATC GGG GAC CAG AGC TCG GGC AAG AGC TCC GTG CTG GAG GCG CTG TCT GGT GTC TCC CTC CCC AGA GGC AGC
--- --- --- --- --- --- --- --- --- --- --- --- ATG GAA ACA GCA ACT CCT GAT TCC ACC CCT GCA TCC AGT CAT CCC TTA CCA AAT GGA GAT GCT GTT GCG CCG GAG GGA AAT CTG GAG ACA ACG TTG GAG AAT AGC CTG TGC AGC CAG TAC GAG GAG AAG GTG CGC CCC TGC ATC GAC CTC ATC GAC TCC CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATC GCC GTC ATC GGG GAC CAG AGC TCG GGC AAG AGC TCC GTG CTG GAG GCG CTG TCT GGT GTC TCC CTC CCC AGA GGC AGC
--- --- --- --- --- --- --- ATG GTT CAT TCT GAC CTG CAA ACC GAA AAT CCC AGT TCG GCC TCT ACA TCC AAT GAT GAG CTA CCA AAT ACA AAT GCT GAT AGG CCT GAG AAA AAT CTG GCC ACG AAG CTG GAG CAC CAC CTG TGC AGC CAC TAC GAG GAG AAG GTG CGC CCC TGC ATT GAC CTC ATC GAC TCC CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATC GCC GTC ATC GGG GAC CAG AGC TCG GGC AAG AGC TCC GTG CTG GAG GCC CTG TCG GGC GTC GCC CTC CCC AGA GGC AGC
--- --- --- --- --- --- --- ATG GTT CGT TCT GGC CTG CAA ACC AGA AAT CCC AAT TCT --- TCT ACA TCC AAT CGT GAA CAA TCA AAT GAA AAT GCT GAT GAG CCA AAG AAA AAT CGG GAC ACA --- CTC GAG CAC CAC CTG TGC AGC CAG TAT GAG GAG AAG GTG CGT CCC TGC ATC GAC CTC GTG GAC TCC CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATC GCC GTC ATC GGG GAC CAG AGC TCA GGC AAG AGC TCC GTG CTG GAG GCC CTG TCG GGT GTC GCC CTC CCC AGA GGC AGT
--- --- --- --- --- --- --- ATG GTT CGT TCT GGC CTG CAA ACG GAA AAT CCC AAT TCG GCT TCT GTA TCC AAT CAT GAA CAA TCA AAT GAA AAT GCT GAT AAG CCA AAG AAA AAT GTG GAC ACA GAG CTC GAG CAC CGC CTG TGC AGC CAG TAC GAG GAG AAG GTG CGC CCC TGC ATC GAC CTC GTG GAC TCC CTG CGG GCC CTG GGC GTG GAG CAG GAC CTG GCC CTG CCC GCC ATC GCC GTC ATC GGG GAC CAG AGC TCG GGC AAG AGC TCC GTG CTG GAG GCC CTG TCG GGC GTC GCC CTC CCC AGA GGC AGC
F3X4, M1a vs M2a | LRT is significant
lnL_M1a = -1181.57
lnL_M2a = -1172.75
LRT: χ2 = 17.64
% sites with ω > 1 = 18.19
avg(ω) = 2.96
p < 0.001
 0.529 0.989 0.892 0.895 0.994 0.847 0.977 0.919 0.844 0.531 0.954 0.578 0.649 0.791 0.910 0.618 0.618 0.979 0.874 0.597 0.643
F3X4, M7/M8a vs M8 | LRT is significant
lnL_M7 = -1184.87 / lnL_M8a = -1182.19
lnL_M8 = -1172.84
LRT: χ2 = 24.05 / LRT: χ2 = 18.7
% sites with ω > 1 = 21.3
avg(ω) = 2.76
p < 0.001 / p < 0.001
 0.582 0.761 0.999 0.982 0.986 0.999 0.966 0.623 0.997 0.987 0.975 0.663 0.993 0.859 0.853 0.961 0.988 0.901 0.834 0.998 0.981 0.910 0.920
F1X4, M1a vs M2a | LRT is significant
lnL_M1a = -1187.64
lnL_M2a = -1179.83
LRT: χ2 = 15.62
% sites with ω > 1 = 28.34
avg(ω) = 2.2
p < 0.001
 0.627 0.537 0.584 0.982 0.917 0.946 0.989 0.811 0.635 0.972 0.905 0.898 0.937 0.745 0.637 0.867 0.934 0.818 0.590 0.989 0.957 0.880 0.814
F1X4, M7/M8a vs M8 | LRT is significant
lnL_M7 = -1190.02 / lnL_M8a = -1187.65
lnL_M8 = -1179.85
LRT: χ2 = 20.33 / LRT: χ2 = 15.61
% sites with ω > 1 = 31.04
avg(ω) = 2.12
p < 0.001 / p < 0.001
 0.808 0.645 0.734 0.998 0.983 0.991 0.999 0.935 0.815 0.996 0.980 0.978 0.518 0.987 0.900 0.761 0.969 0.989 0.952 0.709 0.999 0.993 0.976 0.952 0.595
F61, M1a vs M2a | LRT is significant
lnL_M1a = -1195.67
lnL_M2a = -1186.04
LRT: χ2 = 19.27
% sites with ω > 1 = 30.62
avg(ω) = 2.34
p < 0.001
 0.726 0.521 0.693 0.983 0.858 0.940 0.982 0.784 0.793 0.956 0.875 0.950 0.926 0.714 0.551 0.879 0.977 0.893 0.551 0.996 0.976 0.943 0.901 0.634 0.580
F61, M7/M8a vs M8 | LRT is significant
lnL_M7 = -1197.14 / lnL_M8a = -1195.68
lnL_M8 = -1188.64
LRT: χ2 = 17.01 / LRT: χ2 = 14.08
% sites with ω > 1 = 38.07
avg(ω) = 1.92
p < 0.001 / p < 0.001
 0.873 0.606 0.804 0.997 0.959 0.988 0.997 0.910 0.915 0.991 0.965 0.989 0.982 0.863 0.646 0.967 0.996 0.972 0.645 0.999 0.996 0.988 0.974 0.758 0.680
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- - - - - - - - - - - - M E T A T P D S T L A S S H P L P N G D A V T P E G N L E T T L E N S L C S Q Y E E K V R P C I D L I D S L R A L G V E Q D L A L P A I A V I G D Q S S G K S S V L E A L S G V S L P R G S
- - - - - - - - - - - - M E T A S P D S T P A P S H P L P N G D A V T P E G N L E T T L E N S L C S Q Y E E K V R P C I D L I D S L R A L G V E Q D L A L P A I A V I G D Q S S G K S S V L E A L S G V S L P R G S
- - - - - - - - - - - - M E T A T P D S T P A S S H P L P N G D A V A P E G N L E T T L E N S L C S Q Y E E K V R P C I D L I D S L R A L G V E Q D L A L P A I A V I G D Q S S G K S S V L E A L S G V S L P R G S
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- - - - - - - - - - - - M E T A T P D S A S A S S Q P L P N G D A V V P E V N M E T M L E T S L C S Q Y E E K V R P C I D L I D S L R A L G V E Q D L A L P A I A V I G D Q S S G K S S V L E A L S G V A L P R G S
- - - - - - - M V H S D L Q T E N P S S A S T S N D E L P N T N A D R P E K N L A T K L E H H L C S H Y E E K V R P C I D L I D S L R A L G V E Q D L A L P A I A V I G D Q S S G K S S V L E A L S G V A L P R G S
- - - - - - - M V R S G L Q T R N P N S - S T S N R E Q S N E N A D E P K K N R D T - L E H H L C S Q Y E E K V R P C I D L V D S L R A L G V E Q D L A L P A I A V I G D Q S S G K S S V L E A L S G V A L P R G S
- - - - - - - M V R S G L Q T E N P N S A S V S N H E Q S N E N A D K P K K N V D T E L E H R L C S Q Y E E K V R P C I D L V D S L R A L G V E Q D L A L P A I A V I G D Q S S G K S S V L E A L S G V A L P R G S
M N P P T V K R S P L K V K V K N H N S A S A S S P R L P D A K V - - S E E N L E K G T E S S L C S Y Y E E K I R P C I D L I D S L R A L G V E Q D L A L P A I A V I G D Q S S G K S S V L E A L S G V A L P R G S
- - - - - - - M G V P Q G K I Q N H D L A F A A S P P L P N T E V - - S E K N P E K R E E S S L C S H Y E E K V R P C I D L I D S L R A L G V E Q D L A L P A I A V I G D Q S S G K S S V L E A L S G V A L P R G S
- - - - - - - M G V P Q V K V E S H G S A S A P I P Q L P N A E V - - P E K N L D K G D E I N L C S Y Y E E K V R P C I D L I D S L R A L G V E Q D L A L P A I A V I G D Q S S G K S S V L E A L S G V A L P R G S
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