Mx1 in bats

fragment_2

D E C M K
R S T F Y
N Q G L V
I A W H P

Input
Alignment
Tree
Codeml
Recombination
Significant sites
go back to full alignment

Parameters

PoSeiDon v1.1


Fragment_2
107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201
GGA ATC GTA ACC AGG TGT CCA CTG GTG CTA AAG CTG AAA AAG CAG CTC TCG AGG --- GAT GTG TCT TGG AGG GGG AAG ATC AGC TAC CAG AAC ACG GAG CTC CCG CTT CAG GAC CCC TCC CAG GTG GAG AGG GAA ATC AAC AAA GCC CAA AAC ATC GTG GCT GGG AGT GGA GTT GGC ATC AGC CAC GAG CTC ATC AGT CTG GAG ATC TCC TCC CCT GAC GTC CCG GAC CTG ACC CTT ATT GAT CTT CCC GGC ATC ACC AGG GTG CCT GTG GGA AAT CAG CCC GTG
GGC ATC GTC ACC AGG TGT CCT CTG GTG CTG AAG CTG AGA CAA --- GCG AGG GAC --- GGC GGT GCC TGG AAA GGC AAA GTC AGT TAC CAG GAC GAG GAG GTT GAG ATT CCA GAC CCT TCG GCG GTG GAG AGG GAA ATC CGG AAA GCC CAG GAC GCC ATG GCT GGG GTA GGA GTG GGC ATC AGC CAC GAG CTG ATC ACC CTG GAG GTC AGC TCC CCT CAC GCC CCG GAC CTG ACC CTC ATC GAC CTC CCC GGC ATC ACC AGG GTG GCA GTG GGC AAC CAG CCC GCT
GGT ATC GTC ACG AGG TGT CCT CTG GTG CTG AAG CTG AGA AAA --- GTG ACG GAC --- GGA GAT GGA TGG AAA GGC AAA GTC AGT TAC CAG GAC GTG GAG ATT GAG ATT TCA GAT CCT TTG GCG GTG GAA AAG GAA ATC AGT AAA GCC CAG GAT GTC ATT GCT GGG GTA GGA GTG GAC ATC AGC CAC GAG CTG ATC AAC CTG GAG GTC AGC TCC CCT CAC GCC CCA GAC CTG ACC CTC ATC GAC CTC CCC GGC ATC ACC AGG GTG GCC GTG GGC AAC CAG CCC GCT
GGT ATC GTC ACA AGG TGT CCT CTG GTG CTG AAG CTG AGA AAA --- GTG AGG GAC --- GGA GAC GAA TGG AAA GGC AAA GTC AGT TAC CAC GAC GTG GAG GTT GAG ATT TCA GAT CCT TTG GAG GTG GAA AAG GAA ATC AGT AAA GCC CAG GAT GCC ATT GCA GGG GTA GGA ATG GAC ATC AGC CAT GAG CTG ATC GAC CTG GAG GTC AGC TCC CCT CAC GTC CCA GAC CTG ACC CTC ATC GAC CTC CCC GGC ATC ACC AGG GTG GCC GTG GGC AAC CAG CCA GCT
GGT ATC GTG ACG AGG TGT CCT CTG GTG CTG AAG CTG AGA AAA --- CTG AGG GAC --- GGG GAC GAA TGG AAA GGC AAA GTC AGT TAC AAG GAC CAG GAG ATT GAG ATG TCA GAT GCT TCG GAG GTG GAA GAG GAA ATC AGG AAA GCC CAG GAT GTC ATT GCT GGG GTA GGA ATG GAC ATC AGC CAT GAG CTG ATC AAC CTG GAG GTC AGC TCC CCT CAC GTC CCA GAC CTG ACC CTC ATC GAC CTC CCC GGC ATC ACC AGG GTG GCC CTG GGC AAT CAG CCA GCT
GGT ATT GTT ACA AGA TGT CCC CTG GTG CTG AAA CTG AGA AAA --- CTT AGG CAT --- GAT GAT GAG TGG AAA GGC AAA GTC ACT TAC CGG GAC CTG GAG ATT GAT CTT TCA GCT GCT TCG GAG GTA GAA CAG GAA ATC AGG AAA GCC CAG AAT GTC ATT GCT GGG GAA GGT GTG GGA ATC AGT CAA GAG CTA ATT AAT CTG GAG GTC AGC TCC CCT CAC GTG CCA GAT CTG ACC CTG ATA GAC CTT CCT GGC ATC ACC AGG GTG GCT GTG GGC AAT CAG CCA GCT
GGT ATT GTT ACA AGA TGT CCC CTG GTG CTG AAA CTG AGA AAA --- CTT AGG CAT --- GAT GAT GAG TGG AAA GGC AAA GTC ACT TAC CGG GAC CTG GAG ATT GAT CTT TCA ACT GCT TCG GAG GTA GAA CAG GAA ATC AGG AAA GCC CAG AAT GTC ATT GCT GGG GAA GGT GTG GGA ATC AGT CAA GAG CTA ATT AAT CTG GAG GTC AGC TCC CCT CAC GTG CCA GAT CTG ACC CTG ATA GAC CTT CCT GGC ATC ACC AGG GTG GCT GTG GGC AAT CAG CCA GCT
GGT ATT GTT ACA AGA TGT CCC CTG GTG CTG AAA CTG AGA AAA --- CTT AGG CAT --- GAT GAT GAG TGG AAA GGC AAA GTC ACT TAC CGA GAC CTG GAG ATT GAG CTT TCT ACT GCT TCG GAG GTA GAA CAG GAA ATC AGG AAA GCC CAG AAT GTC ATT GCT GGG GAA GGT GTG GGA ATC AGT CAA GAG CTA ATT AAT CTG GAG GTC AGC TCC CCT CAC GTG CCA GAT CTG ACC CTG ATA GAC CTT CCT GGC ATC ACC AGG GTG GCT GTG GGG AAT CAG CCA GCT
GGT ATT GTT ACA AGA TGT CCC TTG GTG CTG AAG CTG AGA AAA --- CTT AGG CAT --- GAT GAT GAG TGG AAA GGC AAA GTC ACT TAC CGG GAC CTG GAG ATT AAC CTT TCA ACT GCT TTG GAG GTA GAA CAG GAA ATC AGG AAA GCC CAG AAT GTC ATT GCT GGG GAA GGT GTG GGA ATC AGT CAA GAG CTA ATT AAT CTG GAG GTC AGC TCC CCT CAT GTG CCA GAT CTG ACC CTG ATA GAC CTT CCT GGC ATC ACC AGG GTG GCT GTG GGC AAT CAG CCA GCT
GGT ATT GTT ACA AGA TGC CCC CTG GTG CTG AAA CTG AGA AAA --- CTT AGG CAT GAT GAT GAT GAG TGG AAA GGC AAA GTC ACT TAC CGG GAC ATG GAG ATC GAT CTT ACG GCC GCT TCG GAG GTA GAA CAG GAA ATC AGG AAA GCC CAG AAT GTC ATT GCT GGG GAA GGT GTG GGA ATC AGT CAG GAG CTA ATT AAT CTG GAG GTC AGC TCC CCT CAC GTG CCA GAT CTG ACC CTG ATA GAC CTT CCT GGC ATC ACC AGA GTC GCT GTG GGC AAT CAG CCA GCT
GGT ATT GTG ACA AGA TGC CCC CTG GTG CTG AAA CTG AAA AAA --- CTT AAG AGT --- GAA GAG AAG TGG ACA GGC AAG ATC AGT TAC AAG GAC ATT GAG ATT AAC CTT TCA TCC CCG TCA GAG GTC GAG AAG GAA ATC AGC AAG TCT CAG AAT ATC ATT GCC GGG GAA GGT GTG GGG ATC AGT CAT GAG CTA ATC AGT CTG GAA GTC AGC TCC CCA CAC GTC CCA GAT CTG ACC CTG ATA GAT CTT CCT GGC ATC ACC AGG GTG GCC GTG GGT GAT CAG CCA GCT
GGT ATT GTG ACA AGA TGC CCC CTG GTG CTG AAG CTG AAG AAT --- CTT AAG GAT --- GAA GAG AAG TGG ACA GGC AAA ATC AGT TAC AAG GAT ATT GAG ATT AAC CTT TCA GAT CCT TCA GAG GTA GAG AAG GAA ATC AAC AAG TCC CAG AAT GTC ATT GCC GGG GAA GGT GTG GGG ATC AGT CAT GAG CTG ATC AGT CTG GAA GTC AGG TCC CCG CAC GTC CCA GAT CTG ACC CTG ATA GAT CTT CCT GGC ATC ACC AGG GTG GCT ATG GGC AAC CAG CCA GCT
GGT ATT GTT ACA AGA TGC CCC CTG GTG CTG AAA CTG AGA AAA --- CTT AGG CAT GAT GAT GAT GAG TGG AAA GGC AAA GTC ACT TAC CGG GAC ATG GAG ATC AAT CTT TCA GCC GCT TCC GAG GTA GAA CAG GAA ATC AGG AAA GCC CAG AAT GTC ATT GCT GGG GAA GGT GTG GGA ATC AGT CAT GAG CTA ATT AGT CTG GAG GTC AGC TCC CCT CAC GTG CCA GAT CTG ACC CTG ATA GAC CTT CCT GGC ATC ACC AGG GTG GCT GTG GGC AAT CAG CCA GCT
F3X4, M1a vs M2a | LRT not significant
lnL_M1a = -1306.83
lnL_M2a = -1306.83
LRT: χ2 = 0.0
% sites with ω > 1 = NA
avg(ω) = NA
p = 1.0
F3X4, M7/M8a vs M8 | LRT not significant
lnL_M7 = -1305.99 / lnL_M8a = -1305.9
lnL_M8 = -1305.9
LRT: χ2 = 0.19 / LRT: χ2 = 0.0
% sites with ω > 1 = NA
avg(ω) = NA
p = 0.908 / p = 1.0
 0.547 0.760 0.531 0.604 0.813 0.673 0.655 0.537 0.568 0.714 0.584
F1X4, M1a vs M2a | LRT not significant
lnL_M1a = -1321.27
lnL_M2a = -1321.27
LRT: χ2 = 0.0
% sites with ω > 1 = NA
avg(ω) = NA
p = 1.0
F1X4, M7/M8a vs M8 | LRT not significant
lnL_M7 = -1320.34 / lnL_M8a = -1320.29
lnL_M8 = -1320.29
LRT: χ2 = 0.09 / LRT: χ2 = 0.0
% sites with ω > 1 = NA
avg(ω) = NA
p = 0.956 / p = 0.999
 0.526 0.761 0.558 0.832 0.690 0.517 0.673 0.599
F61, M1a vs M2a | LRT not significant
lnL_M1a = -1327.27
lnL_M2a = -1327.27
LRT: χ2 = 0.0
% sites with ω > 1 = NA
avg(ω) = NA
p = 1.0
 0.505
F61, M7/M8a vs M8 | LRT not significant
lnL_M7 = -1326.73 / lnL_M8a = -1326.56
lnL_M8 = -1326.53
LRT: χ2 = 0.39 / LRT: χ2 = 0.06
% sites with ω > 1 = NA
avg(ω) = NA
p = 0.821 / p = 0.803
 0.582 0.620 0.838 0.636 0.688 0.888 0.799 0.557 0.588 0.539 0.592 0.781 0.667 0.550
G I V T R C P L V L K L K K Q L S R - D V S W R G K I S Y Q N T E L P L Q D P S Q V E R E I N K A Q N I V A G S G V G I S H E L I S L E I S S P D V P D L T L I D L P G I T R V P V G N Q P V
G I V T R C P L V L K L R K - L R H D D D E W K G K V T Y R D M E I D L T A A S E V E Q E I R K A Q N V I A G E G V G I S Q E L I N L E V S S P H V P D L T L I D L P G I T R V A V G N Q P A
G I V T R C P L V L K L R K - L R H - D D E W K G K V T Y R D L E I D L S T A S E V E Q E I R K A Q N V I A G E G V G I S Q E L I N L E V S S P H V P D L T L I D L P G I T R V A V G N Q P A
G I V T R C P L V L K L R K - L R H - D D E W K G K V T Y R D L E I E L S T A S E V E Q E I R K A Q N V I A G E G V G I S Q E L I N L E V S S P H V P D L T L I D L P G I T R V A V G N Q P A
G I V T R C P L V L K L R K - L R H - D D E W K G K V T Y R D L E I N L S T A L E V E Q E I R K A Q N V I A G E G V G I S Q E L I N L E V S S P H V P D L T L I D L P G I T R V A V G N Q P A
G I V T R C P L V L K L R K - L R H - D D E W K G K V T Y R D L E I D L S A A S E V E Q E I R K A Q N V I A G E G V G I S Q E L I N L E V S S P H V P D L T L I D L P G I T R V A V G N Q P A
G I V T R C P L V L K L R K - L R H D D D E W K G K V T Y R D M E I N L S A A S E V E Q E I R K A Q N V I A G E G V G I S H E L I S L E V S S P H V P D L T L I D L P G I T R V A V G N Q P A
G I V T R C P L V L K L R Q - A R D - G G A W K G K V S Y Q D E E V E I P D P S A V E R E I R K A Q D A M A G V G V G I S H E L I T L E V S S P H A P D L T L I D L P G I T R V A V G N Q P A
G I V T R C P L V L K L R K - V T D - G D G W K G K V S Y Q D V E I E I S D P L A V E K E I S K A Q D V I A G V G V D I S H E L I N L E V S S P H A P D L T L I D L P G I T R V A V G N Q P A
G I V T R C P L V L K L R K - V R D - G D E W K G K V S Y H D V E V E I S D P L E V E K E I S K A Q D A I A G V G M D I S H E L I D L E V S S P H V P D L T L I D L P G I T R V A V G N Q P A
G I V T R C P L V L K L R K - L R D - G D E W K G K V S Y K D Q E I E M S D A S E V E E E I R K A Q D V I A G V G M D I S H E L I N L E V S S P H V P D L T L I D L P G I T R V A L G N Q P A
G I V T R C P L V L K L K K - L K S - E E K W T G K I S Y K D I E I N L S S P S E V E K E I S K S Q N I I A G E G V G I S H E L I S L E V S S P H V P D L T L I D L P G I T R V A V G D Q P A
G I V T R C P L V L K L K N - L K D - E E K W T G K I S Y K D I E I N L S D P S E V E K E I N K S Q N V I A G E G V G I S H E L I S L E V R S P H V P D L T L I D L P G I T R V A M G N Q P A