Dr. rer. nat. Bioinformatik

RNA Bioinformatics and High Throughput Analysis Jena
Friedrich Schiller University Jena
Faculty of Mathematics and Computer Science
Leutragraben 1
07743 Jena
Germany

E-Mail: emanuel.barth*
Room: 08S01
Phone: +49-3641-9-46481

*@uni-jena.de

The snake whisperer
Publications

2022

Barth, Emanuel; Burggraaff, Johannes; Srivastava, Akash; Winckler, Thomas

Nanopore sequencing for mapping of retrotransposon integration sites in the Dictyostelium discoideum genome Journal Article

In: MicroPubl Biol, 2022.

Abstract | Links | BibTeX

Sorokina, Maria; Barth, Emanuel; Zulfiqar, Mahnoor; Kwantes, Michiel; Pohnert, Georg; Steinbeck, Christoph

Draft genome assembly and sequencing dataset of the marine diatom Skeletonema cf. costatum RCC75 Journal Article

In: Data Brief, vol. 41, pp. 107931, 2022.

Abstract | Links | BibTeX

2021

Barth, Emanuel; Srivastava, Akash; Wengerodt, Diane; Stojiljkovic, Milan; Axer, Hubertus; Witte, Otto W; Kretz, Alexandra; Marz, Manja

Age-dependent expression changes of circadian system-related genes reveal a potentially conserved link to aging Journal Article

In: Aging, vol. 13, no. 24, pp. 25694-25716, 2021.

Abstract | Links | BibTeX

2020

Collatz, Maximilian; Mock, Florian; Barth, Emanuel; Hölzer, Martin; Sachse, Konrad; Marz, Manja

EpiDope: A Deep Neural Network for linear B-cell epitope prediction Journal Article

In: Bioinformatics, vol. 37, no. 4, pp. 448–455, 2020.

Abstract | Links | BibTeX

Mock, Florian; Viehweger, Adrian; Barth, Emanuel; Marz, Manja

VIDHOP, viral host prediction with Deep Learning Journal Article

In: Bioinformatics, vol. 37, no. 3, pp. 318–325, 2020.

Abstract | Links | BibTeX

Barth, Emanuel; Sieber, Patricia; Stark, Heiko; Schuster, Stefan

Robustness during Aging—Molecular Biological and Physiological Aspects Journal Article

In: Cells, vol. 9, no. 8, pp. 1862, 2020.

Abstract | Links | BibTeX

Srivastava, Akash; Barth, Emanuel; Ermolaeva, Maria A.; Guenther, Madlen; Frahm, Christiane; Marz, Manja; Witte, Otto W.

Tissue-specific Gene Expression Changes Are Associated with Aging in Mice Journal Article

In: Genomics Proteomics Bioinformatics, vol. 18, no. 4, pp. 430–442, 2020.

Abstract | Links | BibTeX

2019

Morales-Prieto, Diana M.; Barth, Emanuel; Murrieta-Coxca, Jose Martín; Favaro, Rodolfo R.; Gutiérrez-Samudio, Ruby N.; Chaiwangyen, Wittaya; Ospina-Prieto, Stephanie; Gruhn, Bernd; Schleußner, Ekkehard; Marz, Manja; Markert, Udo R.

Identification of miRNAs and associated pathways regulated by Leukemia Inhibitory Factor in trophoblastic cell lines. Journal Article

In: Placenta, vol. 88, pp. 20–27, 2019.

Abstract | Links | BibTeX

Barth, Emanuel

Insights into the regulation of aging PhD Thesis

2019.

Abstract | Links | BibTeX

Barth, Emanuel; Srivastava, Akash; Stojiljkovic, Milan; Frahm, Christiane; Axer, Hubertus; Witte, Otto W; Marz, Manja

Conserved aging-related signatures of senescence and inflammation in different tissues and species. Journal Article

In: Aging, vol. 11, no. 19, pp. 8556—8572, 2019.

Abstract | Links | BibTeX

Sieber, Patricia; Barth, Emanuel; Marz, Manja

The landscape of the alternatively spliced transcriptome remains stable during aging across different species and tissues Journal Article

In: bioRxiv, pp. 541417, 2019.

Abstract | Links | BibTeX

2018

Lamkiewicz, Kevin; Barth, Emanuel; Marz, Manja; Ibrahim, Bashar

Identification of potential microRNAs associated with Herpesvirus family based on bioinformatic analysis Journal Article

In: bioRxiv, pp. 417782, 2018.

Abstract | Links | BibTeX

Morales-Prieto, Diana M.; Barth, Emanuel; Gutièrrez-Samudio, Ruby N.; Chaiwangyen, Wittaya; Ospina-Prieto, Stephanie; Gruhn, Bernd; Schleußner, Ekkehard; Marz, Manja; Markert, Udo R.

Identification of miRNAs and associated pathways regulated by Leukemia Inhibitory Factor in trophoblastic cell lines Journal Article

In: bioRxiv, pp. 410381, 2018, (Now published in Placenta: https://doi.org/10.1016/j.placenta.2019.09.005).

Abstract | Links | BibTeX

Graf, Laura; Dick, Alexej; Sendker, Franziska; Barth, Emanuel; Marz, Manja; Daumke, Oliver; Kochs, Georg

Effects of allelic variations in the human myxovirus resistance protein A on its antiviral activity Journal Article

In: J Biol Chem, vol. 293, no. 9, pp. 3056–3072, 2018.

Abstract | Links | BibTeX

2017

Baumgart, Mario; Barth, Emanuel; Savino, Aurora; Groth, Marco; Koch, Philipp; Petzold, Andreas; Arisi, Ivan; Platzer, Matthias; Marz, Manja; Cellerino, Alessandro

A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri Journal Article

In: BMC Genomics, vol. 18, pp. 693, 2017.

Abstract | Links | BibTeX

Baumgart, Mario; Barth, Emanuel; Savino, Aurora; Groth, Marco; Koch, Philipp; Petzold, Andreas; Arisi, Ivan; Platzer, Matthias; Marz, Manja; Cellerino, Alessandro

A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri Journal Article

In: bioRxiv, pp. 103697, 2017, (Now published in BMC Genomics: https://doi.org/10.1186/s12864-017-3951-8 ).

Abstract | Links | BibTeX

Riege, Konstantin; Hölzer, Martin; Klassert, Tilman E; Barth, Emanuel; Bräuer, Julia; Collatz, Maximilian; Hufsky, Franziska; Mostajo, Nelly F.; Stock, Magdalena; Vogel, Bertram; Slevogt, Hortense; Marz, Manja

Massive Effect on LncRNAs in Human Monocytes During Fungal and Bacterial Infections and in Response to Vitamins A and D Journal Article

In: Sci Rep, vol. 7, pp. 40598, 2017.

Abstract | Links | BibTeX

2016

Hölzer, Martin; Krähling, Verena; Amman, Fabian; Barth, Emanuel; Bernhart, Stephan H; Carmelo, Victor A O; Collatz, Maximilian; Doose, Gero; Eggenhofer, Florian; Ewald, Jan; Fallmann, Jörg; Feldhahn, Lasse M; Fricke, Markus; Gebauer, Juliane; Gruber, Andreas J; Hufsky, Franziska; Indrischek, Henrike; Kanton, Sabina; Linde, Jörg; Mostajo, Nelly F.; Ochsenreiter, Roman; Riege, Konstantin; Rivarola-Duarte, Lorena; Sahyoun, Abdullah H; Saunders, Sita J; Seemann, Stefan E; Tanzer, Andrea; Vogel, Bertram; Wehner, Stefanie; Wolfinger, Michael T; Backofen, Rolf; Gorodkin, Jan; Grosse, Ivo; Hofacker, Ivo; Hoffmann, Steve; Kaleta, Christoph; Stadler, Peter F; Becker, Stephan; Marz, Manja

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells Journal Article

In: Sci Rep, vol. 6, pp. 34589, 2016.

Abstract | Links | BibTeX

Barth, Emanuel; Hübler, Ron; Baniahmad, Aria; Marz, Manja

The Evolution of COP9 Signalosome in Unicellular and Multicellular Organisms Journal Article

In: Genome Biol Evol, vol. 8, no. 4, pp. 1279–1289, 2016.

Abstract | Links | BibTeX

2015

Graf, Laura; Sendker, Franziska; Dick, Alexej; Barth, Emanuel; Marz, Manja; Daumke, Oliver; Kochs, Georg

ID: 187: Allelic variations in the interferon-induced human MxA protein affect its antiviral activity against influenza A virus Journal Article

In: Cytokine, vol. 76, no. 1, pp. 98, 2015.

Abstract | Links | BibTeX

2012

Gimpel, Matthias; Preis, Heike; Barth, Emanuel; Gramzow, Lydia; Brantl, Sabine

SR1 - a small RNA with two remarkably conserved functions Journal Article

In: Nucleic Acids Res, vol. 40, pp. 11659–11672, 2012.

Abstract | Links | BibTeX

Conferences
  • 10/2019 17th Herbstseminar der Bioinformatik, Doubice
  • 09/2019 German Conference on Bioinformatics 2019, Heidelberg
  • 02/2018 33th TBI Winterseminar, Bled
  • 10/2017 15th Herbstseminar der Bioinformatik, Doubice
  • 04/2017 1st HACKEN Workshop, Jena
  • 03/2017 1st EVBC Meeting, Jena
  • 02/2017 32th TBI Winterseminar, Bled
  • 05/2017 Central German Meeting on Bioinformatics 2017, Leipzig
  • 10/2016 14th Herbstseminar der Bioinformatik, Doubice
  • 02/2016 31th TBI Winterseminar, Bled
  • 01/2016 ZAJ Symposium, Jena
  • 10/2015 13th Herbstseminar der Bioinformatik, Doubice
  • 08/2015 Central German Meeting on Bioinformatics 2015, Halle
  • 02/2015 30th TBI Winterseminar, Bled
  • 11/2014 ”Fight against Ebola in silico“ Hackathon, Jena
  • 10/2014 12th Herbstseminar der Bioinformatik, Doubice
CV
  • since 02/2019 Post-Doc and Scientific Coordinator at RNA Bioinformatics and High Throughput Analysis, Friedrich Schiller University, Jena
  • 01/2015 – 01/2019  PhD Student at RNA Bioinformatics and High Throughput Analysis, Friedrich Schiller University, Jena
    PhD thesis: “Insights into the regulation of aging”
  • 10/2012 – 11/2014 Master of Science in Bioinformatics at Friedrich Schiller University, Jena
    Master thesis: “Comparison of de novo transcriptome assemblers”
  • 10/2009 – 09/2012 Bachelor of Science in Bioinformatics at Friedrich Schiller University, Jena
    Bachelor thesis: “Homology search of small non-coding RNAs in Bacillus subtilis“
Funding