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Lehre » RNA Bioinformatik

Veranstaltungsart: Vorlesung/Übung
Zugeordnete Person: Manja Marz
Termin: N.A.

Vorlesungsskripte:

  • Vorlesung 01
  • Vorlesung 02
  • Vorlesung 03 (folgt noch)
  • Vorlesung 04 (folgt noch)
  • Vorlesung 05
  • Vorlesung 06
  • HMMs und CMs
  • Covariance Models and Infernal
  • Homology-based ncRNA identification


Original Literatur: (pdfs for download)

  • Variations on RNA folding and alignment: lessons from Benasque (Zucker Algorithm)
  • Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering (LocaRNA)
  • The Partition Function Variant of Sankoff’s Algorithm
  • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
  • Fast and reliable prediction of noncoding RNAs (RNAz)
  • Bcheck: a wrapper tool for detecting RNase P RNA genes
  • Comparative analysis of eukaryotic U3 snoRNA
  • RNA sequence analysis using covariance models
  • What is a hidden Markov model?

Lehrmaterial:

  • Bacteria-wide detection of 6S RNAs

Media:

  • LocaRNA tutorial download | youtube
2019-09-18

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